HL_9KMU_006

3D structure

PDB id

9KMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

9KMU|1|2|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KMU_006 not in the Motif Atlas

Geometric match to HL_8GLP_091

Geometric discrepancy: 0.0645

The information below is about HL_8GLP_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9KMU|1|2|G|377
9KMU|1|2|U|378
9KMU|1|2|C|379
9KMU|1|2|G|380
9KMU|1|2|C|381
9KMU|1|2|C|382
9KMU|1|2|G|383
9KMU|1|2|U|384
9KMU|1|2|G|385
9KMU|1|2|C|386
9KMU|1|2|C|387

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein eS8

Chain L

Small ribosomal subunit protein uS17