HL_9KMV_008

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9KMV|1|2|C|450, 9KMV|1|2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMV|1|2|C|441
9KMV|1|2|C|442
9KMV|1|2|U|443
9KMV|1|2|G|444
9KMV|1|2|A|445
9KMV|1|2|G|446
9KMV|1|2|A|447
9KMV|1|2|A|448
9KMV|1|2|A|449
9KMV|1|2|C|450
9KMV|1|2|G|451
9KMV|1|2|G|452

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8

Chain Y

Small ribosomal subunit protein eS24