HL_9KMW_015

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

GUUCUAUUUUGUUGGUUUUCGGAAC

Length

25 nucleotides

Bulged bases

9KMW|1|2|C|884, 9KMW|1|2|A|886, 9KMW|1|2|U|887, 9KMW|1|2|U|889, 9KMW|1|2|U|890, 9KMW|1|2|G|891, 9KMW|1|2|U|892, 9KMW|1|2|U|893, 9KMW|1|2|U|896, 9KMW|1|2|U|897, 9KMW|1|2|U|898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMW|1|2|G|881
9KMW|1|2|U|882
9KMW|1|2|U|883
9KMW|1|2|C|884
9KMW|1|2|U|885
9KMW|1|2|A|886
9KMW|1|2|U|887
9KMW|1|2|U|888
9KMW|1|2|U|889
9KMW|1|2|U|890
9KMW|1|2|G|891
9KMW|1|2|U|892
9KMW|1|2|U|893
9KMW|1|2|G|894
9KMW|1|2|G|895
9KMW|1|2|U|896
9KMW|1|2|U|897
9KMW|1|2|U|898
9KMW|1|2|U|899
9KMW|1|2|C|900
9KMW|1|2|G|901
9KMW|1|2|G|902
9KMW|1|2|A|903
9KMW|1|2|A|904
9KMW|1|2|C|905

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS17