9KMW Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9KMW_001 | 1/2/7:17 | No text annotation | homologous HL_9H3G_079 HL_73535.4 | |
| HL_9KMW_002 | 1/2/69:80 | No text annotation | ||
| HL_9KMW_003 | 1/2/156:162 | No text annotation | homologous HL_9PN5_079 HL_34789.7 | |
| HL_9KMW_005 | 1/2/288:295 | No text annotation | homologous HL_9PN5_082 HL_67772.4 | |
| HL_9KMW_006 | 1/2/377:387 | No text annotation | ||
| HL_9KMW_007 | 1/2/416:421 | No text annotation | homologous HL_9PN5_085 HL_34789.7 | |
| HL_9KMW_008 | 1/2/441:452 | No text annotation | homologous HL_9PN5_086 HL_86432.4 | |
| HL_9KMW_009 | 1/2/462:467 | No text annotation | homologous HL_9PN5_087 HL_61337.7 | |
| HL_9KMW_010 | 1/2/498:504 | No text annotation | homologous HL_9H3G_088 HL_25795.2 | |
| HL_9KMW_012 | 1/2/569:581 | No text annotation | homologous HL_9H3G_089 HL_68749.4 | |
| HL_9KMW_013 | 1/2/618:623 | No text annotation | homologous HL_9PN5_091 HL_34789.7 | |
| HL_9KMW_014 | 1/2/820:828 | No text annotation | homologous HL_9PN5_092 HL_11974.5 | |
| HL_9KMW_015 | 1/2/881:905 | No text annotation | ||
| HL_9KMW_016 | 1/2/957:966 | No text annotation | homologous HL_9PN5_095 HL_38491.5 | |
| HL_9KMW_017 | 1/2/994:999 | No text annotation | homologous HL_9H3G_094 HL_34789.7 | |
| HL_9KMW_018 | 1/2/1054:1064 | No text annotation | homologous HL_9H3G_095 HL_38491.5 | |
| HL_9KMW_019 | 1/2/1113:1120 | No text annotation | ||
| HL_9KMW_020 | 1/2/1141:1146 | No text annotation | homologous HL_9H3G_097 HL_34789.7 | |
| HL_9KMW_021 | 1/2/1178:1183 | No text annotation | homologous HL_9H3G_098 HL_34789.7 | |
| HL_9KMW_022 | 1/2/1245:1254 | No text annotation | homologous HL_9H3G_099 HL_97521.4 | |
| HL_9KMW_024 | 1/2/1281:1316 | No text annotation | ||
| HL_9KMW_025 | 1/2/1353:1358 | No text annotation | homologous HL_9H3G_101 HL_34789.7 | |
| HL_9KMW_026 | 1/2/1366:1373 | No text annotation | homologous HL_9H3G_102 HL_63894.5 | |
| HL_9KMW_027 | 1/2/1460:1466 | No text annotation | geometric HL_8CRE_221 HL_76371.5 | |
| HL_9KMW_029 | 1/2/1613:1626 | No text annotation | ||
| HL_9KMW_030 | 1/2/1658:1666 | No text annotation | ||
| HL_9KMW_031 | 1/2/1847:1852 | No text annotation | homologous HL_9PN5_111 HL_34789.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9KMW_004 | No text annotation | ||
| HL_9KMW_011 | No text annotation | ||
| HL_9KMW_023 | No text annotation | ||
| HL_9KMW_028 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9KMW_001 | 1/2/23:25, 1/2/649:651 | Isolated non-canonical cWW pair | geometric IL_8CRE_425 IL_01003.7 | |
| IL_9KMW_002 | 1/2/34:36, 1/2/519:521 | Isolated non-canonical cWW pair | homologous IL_9H3G_156 IL_01003.7 | |
| IL_9KMW_003 | 1/2/37:40, 1/2/514:518 | Double sheared | geometric IL_8GLP_190 IL_58355.5 | |
| IL_9KMW_004 | 1/2/41:47, 1/2/479:481 | No text annotation | geometric IL_8GLP_191 IL_88082.5 | |
| IL_9KMW_005 | 1/2/49:51, 1/2/476:477 | Minor groove platform | homologous IL_9H3G_159 IL_26092.1 | |
| IL_9KMW_006 | 1/2/57:62, 1/2/86:88 | No text annotation | homologous IL_9PN5_147 IL_61299.9 | |
| IL_9KMW_007 | 1/2/63:68, 1/2/81:85 | No text annotation | homologous IL_9PN5_148 IL_21667.4 | |
| IL_9KMW_008 | 1/2/108:110, 1/2/351:353 | Isolated cWH basepair | geometric IL_8AF0_002 IL_10892.5 | |
| IL_9KMW_009 | 1/2/110:112, 1/2/349:351 | Isolated non-canonical cWW pair | geometric IL_8GLP_197 IL_01003.7 | |
| IL_9KMW_010 | 1/2/112:115, 1/2/348:349 | No text annotation | homologous IL_9H3G_163 IL_71421.6 | |
| IL_9KMW_011 | 1/2/116:121, 1/2/343:347 | No text annotation | ||
| IL_9KMW_012 | 1/2/145:151, 1/2/167:174 | No text annotation | homologous IL_9H3G_165 IL_24485.3 | |
| IL_9KMW_013 | 1/2/152:154, 1/2/164:166 | Isolated cWH basepair | homologous IL_9PN5_153 IL_10892.5 | |
| IL_9KMW_014 | 1/2/188:192, 1/2/207:211 | No text annotation | geometric IL_8GLP_204 IL_87767.5 | |
| IL_9KMW_015 | 1/2/216:220, 1/2/301:309 | No text annotation | ||
| IL_9KMW_016 | 1/2/312:314, 1/2/336:337 | Single bulged A | homologous IL_9H3G_171 IL_14190.5 | |
| IL_9KMW_017 | 1/2/359:364, 1/2/396:403 | Kink-turn with non-sequential stacking | homologous IL_9PN5_159 IL_46174.7 | |
| IL_9KMW_018 | 1/2/366:371, 1/2/393:394 | No text annotation | homologous IL_9H3G_174 IL_01372.4 | |
| IL_9KMW_019 | 1/2/411:413, 1/2/424:429 | No text annotation | homologous IL_9H3G_175 IL_93336.4 | |
| IL_9KMW_020 | 1/2/437:439, 1/2/454:456 | Isolated cWH basepair | homologous IL_9PN5_162 IL_10892.5 | |
| IL_9KMW_021 | 1/2/459:461, 1/2/468:470 | Isolated non-canonical cWW pair | homologous IL_9PN5_163 IL_19025.1 | |
| IL_9KMW_022 | 1/2/487:489, 1/2/511:512 | Single bulged U | homologous IL_9PN5_164 IL_97561.8 | |
| IL_9KMW_023 | 1/2/491:495, 1/2/508:509 | No text annotation | homologous IL_9PN5_165 IL_26900.4 | |
| IL_9KMW_024 | 1/2/495:496, 1/2/506:508 | Single bulged G | homologous IL_9PN5_166 IL_28408.5 | |
| IL_9KMW_025 | 1/2/529:530, 1/2/554:556 | Single bulged A | geometric IL_9CFN_004 IL_14190.5 | |
| IL_9KMW_026 | 1/2/530:534, 1/2/549:554 | Partly complementary | geometric IL_7VYX_008 IL_71154.6 | |
| IL_9KMW_027 | 1/2/535:538, 1/2/545:548 | No text annotation | geometric IL_8GLP_187 IL_30722.2 | |
| IL_9KMW_028 | 1/2/563:565, 1/2/585:592 | No text annotation | homologous IL_9PN5_168 IL_02511.3 | |
| IL_9KMW_029 | 1/2/566:569, 1/2/581:584 | Tandem non-canonical cWW pairs | geometric IL_5C5W_001 IL_71194.5 | |
| IL_9KMW_030 | 1/2/599:606, 1/2/636:637 | No text annotation | homologous IL_9H3G_185 IL_11411.4 | |
| IL_9KMW_031 | 1/2/606:608, 1/2/635:636 | Single bulged U | homologous IL_9PN5_172 IL_97561.8 | |
| IL_9KMW_032 | 1/2/611:617, 1/2/624:632 | Kink-turn related | homologous IL_9H3G_187 IL_52042.4 | |
| IL_9KMW_033 | 1/2/663:665, 1/2/1162:1164 | Isolated non-canonical cWW pair | homologous IL_9H3G_188 IL_19025.1 | |
| IL_9KMW_034 | 1/2/665:671, 1/2/1161:1162 | No text annotation | homologous IL_9H3G_189 IL_20847.4 | |
| IL_9KMW_035 | 1/2/673:675, 1/2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_9PN5_175 IL_01003.7 | |
| IL_9KMW_036 | 1/2/676:680, 1/2/1025:1029 | No text annotation | homologous IL_9H3G_191 IL_05821.4 | |
| IL_9KMW_037 | 1/2/802:803, 1/2/860:863 | No text annotation | homologous IL_9H3G_192 IL_73108.5 | |
| IL_9KMW_038 | 1/2/805:807, 1/2/856:858 | Isolated non-canonical cWW pair | homologous IL_9PN5_179 IL_71625.6 | |
| IL_9KMW_039 | 1/2/807:815, 1/2/849:856 | No text annotation | homologous IL_9H3G_194 IL_59049.5 | |
| IL_9KMW_040 | 1/2/874:876, 1/2/910:912 | Isolated non-canonical cWW pair | geometric IL_8GLP_227 IL_01003.7 | |
| IL_9KMW_041 | 1/2/877:879, 1/2/907:909 | No text annotation | homologous IL_9H3G_195 NA | |
| IL_9KMW_042 | 1/2/922:923, 1/2/1019:1022 | Major groove platform; stack outside cWW | homologous IL_9PN5_182 IL_74641.5 | |
| IL_9KMW_043 | 1/2/925:927, 1/2/1014:1017 | Isolated non-canonical cWW pair | homologous IL_9H3G_198 IL_01003.7 | |
| IL_9KMW_044 | 1/2/928:931, 1/2/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_9PN5_184 IL_15225.5 | |
| IL_9KMW_045 | 1/2/931:935, 1/2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_9PN5_185 IL_15225.5 | |
| IL_9KMW_046 | 1/2/942:945, 1/2/981:984 | Tandem non-canonical cWW pairs | homologous IL_9PN5_186 IL_15225.5 | |
| IL_9KMW_047 | 1/2/952:956, 1/2/967:974 | Kink-turn | homologous IL_9H3G_202 IL_71972.2 | |
| IL_9KMW_048 | 1/2/1042:1047, 1/2/1071:1073 | No text annotation | homologous IL_9H3G_203 IL_31690.2 | |
| IL_9KMW_049 | 1/2/1047:1051, 1/2/1067:1071 | No text annotation | homologous IL_9PN5_190 IL_05821.4 | |
| IL_9KMW_050 | 1/2/1091:1093, 1/2/1152:1158 | No text annotation | homologous IL_9H3G_205 IL_82706.5 | |
| IL_9KMW_051 | 1/2/1098:1101, 1/2/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_9PN5_192 IL_15225.5 | |
| IL_9KMW_052 | 1/2/1101:1103, 1/2/1129:1131 | Isolated cWH basepair | geometric IL_8GLP_245 IL_10892.5 | |
| IL_9KMW_053 | 1/2/1108:1110, 1/2/1123:1124 | Minor groove platform | geometric IL_8GLP_246 IL_26092.1 | |
| IL_9KMW_054 | 1/2/1168:1175, 1/2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_9PN5_194 IL_84044.4 | |
| IL_9KMW_055 | 1/2/1203:1204, 1/2/1694:1696 | Single bulged A | homologous IL_9PN5_195 IL_14190.5 | |
| IL_9KMW_056 | 1/2/1206:1208, 1/2/1691:1692 | Single bulged G | homologous IL_9PN5_196 IL_28408.5 | |
| IL_9KMW_057 | 1/2/1214:1217, 1/2/1681:1685 | No text annotation | ||
| IL_9KMW_059 | 1/2/1347:1349, 1/2/1380:1382 | Isolated cWH basepair | homologous IL_9H3G_223 IL_10892.5 | |
| IL_9KMW_060 | 1/2/1363:1365, 1/2/1374:1375 | Minor groove platform | homologous IL_9PN5_211 IL_37129.1 | |
| IL_9KMW_061 | 1/2/1395:1399, 1/2/1447:1450 | No text annotation | geometric IL_8GLP_337 IL_37443.2 | |
| IL_9KMW_062 | 1/2/1399:1405, 1/2/1441:1447 | No text annotation | ||
| IL_9KMW_063 | 1/2/1536:1550, 1/2/1582:1597 | No text annotation | ||
| IL_9KMW_064 | 1/2/1550:1558, 1/2/1577:1582 | No text annotation | ||
| IL_9KMW_066 | 1/2/1604:1610, 1/2/1629:1635 | No text annotation | ||
| IL_9KMW_067 | 1/2/1700:1702, 1/2/1833:1836 | No text annotation | homologous IL_9PN5_220 IL_18228.4 | |
| IL_9KMW_068 | 1/2/1702:1705, 1/2/1829:1833 | No text annotation | homologous IL_9H3G_234 IL_25873.5 | |
| IL_9KMW_069 | 1/2/1706:1708, 1/2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_9PN5_222 IL_01003.7 | |
| IL_9KMW_070 | 1/2/1708:1712, 1/2/1821:1826 | No text annotation | ||
| IL_9KMW_071 | 1/2/1714:1716, 1/2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_9PN5_224 IL_01003.7 | |
| IL_9KMW_072 | 1/2/1717:1736, 1/2/1798:1816 | No text annotation | ||
| IL_9KMW_073 | 1/2/1738:1741, 1/2/1793:1796 | Tandem non-canonical cWW pairs | homologous IL_9H3G_242 IL_71194.5 | |
| IL_9KMW_074 | 1/2/1742:1746, 1/2/1788:1792 | No text annotation | homologous IL_9PN5_231 IL_15190.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9KMW_058 | No text annotation | ||
| IL_9KMW_065 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9KMW_001 | 1/2/40:41, 1/2/481:487, 1/2/512:514 | No text annotation | geometric J3_8GLP_040 J3_58657.4 | |
| J3_9KMW_002 | 1/2/40:47, 1/2/479:487, 1/2/512:514 | No text annotation | homologous J3_9H3G_029 J3_63856.4 | |
| J3_9KMW_003 | 1/2/816:819, 1/2/829:831, 1/2/843:848 | No text annotation | homologous J3_9H3G_032 J3_97642.5 | |
| J3_9KMW_004 | 1/2/938:941, 1/2/985:993, 1/2/1000:1004 | No text annotation | ||
| J3_9KMW_005 | 1/2/1094:1096, 1/2/1136:1140, 1/2/1147:1151 | No text annotation | homologous J3_9H3G_034 NA | |
| J3_9KMW_006 | 1/2/1333:1345, 1/2/1384:1391, 1/2/1479:1498 | No text annotation | ||
| J3_9KMW_007 | 1/2/1350:1351, 1/2/1360:1363, 1/2/1375:1379 | No text annotation | homologous J3_9PN5_040 J3_76043.7 | |
| J3_9KMW_008 | 1/2/1391:1395, 1/2/1450:1456, 1/2/1470:1479 | No text annotation | ||
| J3_9KMW_009 | 1/2/1532:1536, 1/2/1597:1604, 1/2/1635:1638 | No text annotation | homologous J3_9H3G_043 J3_03192.4 | |
| J4_9KMW_001 | 1/2/98:106, 1/2/355:357, 1/2/405:409, 1/2/431:432 | No text annotation | homologous J4_9H3G_013 J4_15241.5 | |
| J4_9KMW_002 | 1/2/671:673, 1/2/1032:1037, 1/2/1078:1089, 1/2/1160:1161 | No text annotation | homologous J4_9PN5_011 J4_14595.4 | |
| J5_9KMW_001 | 1/2/30:34, 1/2/521:527, 1/2/558:563, 1/2/592:595, 1/2/641:644 | No text annotation | homologous J5_9H3G_007 J5_04786.3 | |
| J5_9KMW_002 | 1/2/30:34, 1/2/521:527, 1/2/558:565, 1/2/585:595, 1/2/641:644 | No text annotation | ||
| J5_9KMW_003 | 1/2/53:56, 1/2/89:96, 1/2/434:436, 1/2/457:459, 1/2/470:474 | No text annotation | homologous J5_9PN5_009 J5_58574.4 | |
| J5_9KMW_004 | 1/2/122:130, 1/2/182:185, 1/2/214:216, 1/2/309:312, 1/2/337:342 | No text annotation | ||
| J7_9KMW_001 | 1/2/1218:1244, 1/2/1255:1269, 1/2/1271:1277, 1/2/1320:1333, 1/2/1498:1532, 1/2/1638:1651, 1/2/1673:1680 | No text annotation | ||
| J8_9KMW_001 | 1/2/1218:1244, 1/2/1255:1269, 1/2/1271:1277, 1/2/1320:1345, 1/2/1384:1391, 1/2/1479:1532, 1/2/1638:1651, 1/2/1673:1680 | No text annotation |
Problematic loops
No problematic loops
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