HL_9KMW_024

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

GACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUC

Length

36 nucleotides

Bulged bases

9KMW|1|2|A|1282, 9KMW|1|2|C|1283, 9KMW|1|2|A|1284, 9KMW|1|2|A|1291, 9KMW|1|2|C|1292, 9KMW|1|2|G|1294, 9KMW|1|2|U|1296, 9KMW|1|2|U|1297, 9KMW|1|2|G|1298, 9KMW|1|2|A|1299, 9KMW|1|2|U|1300, 9KMW|1|2|A|1301, 9KMW|1|2|U|1304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMW|1|2|G|1281
9KMW|1|2|A|1282
9KMW|1|2|C|1283
9KMW|1|2|A|1284
9KMW|1|2|G|1285
9KMW|1|2|G|1286
9KMW|1|2|A|1287
9KMW|1|2|U|1288
9KMW|1|2|U|1289
9KMW|1|2|G|1290
9KMW|1|2|A|1291
9KMW|1|2|C|1292
9KMW|1|2|A|1293
9KMW|1|2|G|1294
9KMW|1|2|A|1295
9KMW|1|2|U|1296
9KMW|1|2|U|1297
9KMW|1|2|G|1298
9KMW|1|2|A|1299
9KMW|1|2|U|1300
9KMW|1|2|A|1301
9KMW|1|2|G|1302
9KMW|1|2|C|1303
9KMW|1|2|U|1304
9KMW|1|2|C|1305
9KMW|1|2|U|1306
9KMW|1|2|U|1307
9KMW|1|2|U|1308
9KMW|1|2|C|1309
9KMW|1|2|U|1310
9KMW|1|2|C|1311
9KMW|1|2|G|1312
9KMW|1|2|A|1313
9KMW|1|2|U|1314
9KMW|1|2|U|1315
9KMW|1|2|C|1316

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein eS10

Chain M

Small ribosomal subunit protein eS12

Chain P

Small ribosomal subunit protein uS19

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31