HL_9KMW_027

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

9KMW|1|2|U|1462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KMW_027 not in the Motif Atlas

Geometric match to HL_8CRE_221

Geometric discrepancy: 0.1974

The information below is about HL_8CRE_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.5

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

9KMW|1|2|C|1460
9KMW|1|2|G|1461
9KMW|1|2|U|1462
9KMW|1|2|U|1463
9KMW|1|2|C|1464
9KMW|1|2|A|1465
9KMW|1|2|G|1466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

Small ribosomal subunit protein eS17

Chain c

Small ribosomal subunit protein eS28

Chain g

Small ribosomal subunit protein RACK1