HL_9KMX_014

3D structure

PDB id

9KMX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

9KMX|1|2|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KMX_014 not in the Motif Atlas

Homologous match to HL_9PN5_092

Geometric discrepancy: 0.1076

The information below is about HL_9PN5_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9KMX|1|2|U|820
9KMX|1|2|G|821
9KMX|1|2|U|822
9KMX|1|2|U|823
9KMX|1|2|C|824
9KMX|1|2|A|825
9KMX|1|2|A|826
9KMX|1|2|A|827
9KMX|1|2|G|828

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain J

Small ribosomal subunit protein uS4

Chain Y

Small ribosomal subunit protein eS24