HL_9KMY_012
3D structure
- PDB id
- 9KMY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- ACUUUAAAUCCUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9KMY_012 not in the Motif Atlas
- Homologous match to HL_9PN5_090
- Geometric discrepancy: 0.2257
- The information below is about HL_9PN5_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68749.4
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9KMY|1|2|A|569
9KMY|1|2|C|570
9KMY|1|2|U|571
9KMY|1|2|U|572
9KMY|1|2|U|573
9KMY|1|2|A|574
9KMY|1|2|A|575
9KMY|1|2|A|576
9KMY|1|2|U|577
9KMY|1|2|C|578
9KMY|1|2|C|579
9KMY|1|2|U|580
9KMY|1|2|U|581
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- Small ribosomal subunit protein eS4, X isoform
- Chain J
- Small ribosomal subunit protein uS4
- Chain Y
- Small ribosomal subunit protein eS24
Coloring options: