HL_9KN0_006

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

9KN0|1|2|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KN0_006 not in the Motif Atlas

Geometric match to HL_8GLP_091

Geometric discrepancy: 0.0541

The information below is about HL_8GLP_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9KN0|1|2|G|377
9KN0|1|2|U|378
9KN0|1|2|C|379
9KN0|1|2|G|380
9KN0|1|2|C|381
9KN0|1|2|C|382
9KN0|1|2|G|383
9KN0|1|2|U|384
9KN0|1|2|G|385
9KN0|1|2|C|386
9KN0|1|2|C|387

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein eS8

Chain L

Small ribosomal subunit protein uS17