HL_9KN0_010

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9KN0|1|2|A|500, 9KN0|1|2|C|502, 9KN0|1|2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KN0_010 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.1571

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9KN0|1|2|C|498
9KN0|1|2|G|499
9KN0|1|2|A|500
9KN0|1|2|C|501
9KN0|1|2|C|502
9KN0|1|2|C|503
9KN0|1|2|G|504

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain Y

Small ribosomal subunit protein eS24