HL_9KN0_016

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN0|1|2|A|957
9KN0|1|2|G|958
9KN0|1|2|G|959
9KN0|1|2|U|960
9KN0|1|2|G|961
9KN0|1|2|A|962
9KN0|1|2|A|963
9KN0|1|2|A|964
9KN0|1|2|U|965
9KN0|1|2|U|966

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

Small ribosomal subunit protein uS11

Chain a

Small ribosomal subunit protein eS26