HL_9KN5_011

3D structure

PDB id

9KN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9KN5|1|S2|A|500, 9KN5|1|S2|C|502, 9KN5|1|S2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KN5_011 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.1627

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9KN5|1|S2|C|498
9KN5|1|S2|G|499
9KN5|1|S2|A|500
9KN5|1|S2|C|501
9KN5|1|S2|C|502
9KN5|1|S2|C|503
9KN5|1|S2|G|504

Current chains

Chain S2

Chains: S2

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SY

40S ribosomal protein S24