HL_9KN5_015

3D structure

PDB id

9KN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

9KN5|1|S2|G|821, 9KN5|1|S2|U|823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN5|1|S2|U|820
9KN5|1|S2|G|821
9KN5|1|S2|U|822
9KN5|1|S2|U|823
9KN5|1|S2|C|824
9KN5|1|S2|A|825
9KN5|1|S2|A|826
9KN5|1|S2|A|827
9KN5|1|S2|G|828

Current chains

Chain S2

Chains: S2

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24