HL_9KN5_030

3D structure

PDB id

9KN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

9KN5|1|S2|U|1621, 9KN5|1|S2|U|1622, 9KN5|1|S2|A|1623||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN5|1|S2|A|1614
9KN5|1|S2|U|1615
9KN5|1|S2|U|1616
9KN5|1|S2|G|1617
9KN5|1|S2|C|1618
9KN5|1|S2|A|1619
9KN5|1|S2|A|1620
9KN5|1|S2|U|1621
9KN5|1|S2|U|1622
9KN5|1|S2|A|1623||A
9KN5|1|S2|U|1624
9KN5|1|S2|U|1625

Current chains

Chain S2

Chains: S2

Nearby chains

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18

Chain Sd

40S ribosomal protein S29