HL_9KN6_015

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KN6_015 not in the Motif Atlas

Homologous match to HL_9PN5_091

Geometric discrepancy: 0.1003

The information below is about HL_9PN5_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9KN6|1|S2|C|618
9KN6|1|S2|A|619
9KN6|1|S2|G|620
9KN6|1|S2|C|621
9KN6|1|S2|C|622
9KN6|1|S2|G|623

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SX

40S ribosomal protein S23