RNA 3D Hub //

9KN6 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9KN6_0011/S2/7:17No text annotation
HL_9KN6_0021/S2/69:80No text annotation
HL_9KN6_0031/S2/156:162No text annotation
HL_9KN6_0051/S2/288:295No text annotation
HL_9KN6_0071/S2/377:387No text annotation
HL_9KN6_0081/S2/416:421No text annotation
HL_9KN6_0091/S2/441:452No text annotation
HL_9KN6_0101/S2/462:467No text annotation
HL_9KN6_0111/S2/498:504No text annotation
HL_9KN6_0141/S2/569:581No text annotation
HL_9KN6_0151/S2/618:623No text annotation
HL_9KN6_0161/S2/820:828No text annotation
HL_9KN6_0181/S2/957:966No text annotation
HL_9KN6_0191/S2/994:999No text annotation
HL_9KN6_0201/S2/1054:1064No text annotation
HL_9KN6_0211/S2/1113:1120No text annotation
HL_9KN6_0221/S2/1141:1146No text annotation
HL_9KN6_0231/S2/1178:1183No text annotation
HL_9KN6_0241/S2/1245:1254No text annotation
HL_9KN6_0251/S2/1295:1304No text annotation
HL_9KN6_0261/S2/1353:1358No text annotation
HL_9KN6_0271/S2/1366:1373No text annotation
HL_9KN6_0281/S2/1416:1424No text annotation
HL_9KN6_0291/S2/1460:1466No text annotation
HL_9KN6_0301/S2/1565:1570No text annotation
HL_9KN6_0311/S2/1614:1625No text annotation
HL_9KN6_0321/S2/1658:1666No text annotation
HL_9KN6_0341/S2/1847:1852No text annotation
HL_9KN6_0351/zy/30:38tRNA anticodon loop
homologous
HL_6UFG_007
HL_81376.3
HL_9KN6_0371/zz/79:87No text annotation
HL_9KN6_0381/zz/161:166No text annotation
HL_9KN6_0401/zz/230:237No text annotation
HL_9KN6_0411/zz/263:270No text annotation
HL_9KN6_0431/zz/294:299No text annotation
HL_9KN6_0441/zz/304:313No text annotation

Problematic loops

#loop idProblemSequence
HL_9KN6_004No text annotation
HL_9KN6_006No text annotation
HL_9KN6_012No text annotation
HL_9KN6_013No text annotation
HL_9KN6_017No text annotation
HL_9KN6_033No text annotation
HL_9KN6_036No text annotation
HL_9KN6_039No text annotation
HL_9KN6_042No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9KN6_0011/S2/23:25,
1/S2/649:651		No text annotation
IL_9KN6_0021/S2/34:36,
1/S2/519:521		No text annotation
IL_9KN6_0031/S2/37:40,
1/S2/514:518		No text annotation
IL_9KN6_0041/S2/41:47,
1/S2/479:481		No text annotation
IL_9KN6_0051/S2/49:51,
1/S2/476:477		No text annotation
IL_9KN6_0061/S2/57:62,
1/S2/86:88		No text annotation
IL_9KN6_0071/S2/63:68,
1/S2/81:85		No text annotation
IL_9KN6_0081/S2/108:110,
1/S2/351:353		No text annotation
IL_9KN6_0091/S2/110:112,
1/S2/349:351		No text annotation
IL_9KN6_0101/S2/112:115,
1/S2/348:349		No text annotation
IL_9KN6_0111/S2/116:121,
1/S2/343:347		No text annotation
IL_9KN6_0121/S2/123:124,
1/S2/339:341		No text annotation
IL_9KN6_0131/S2/145:151,
1/S2/167:174		No text annotation
IL_9KN6_0141/S2/152:154,
1/S2/164:166		No text annotation
IL_9KN6_0151/S2/188:192,
1/S2/207:211		No text annotation
IL_9KN6_0161/S2/216:219,
1/S2/302:309		No text annotation
IL_9KN6_0171/S2/312:314,
1/S2/336:337		No text annotation
IL_9KN6_0181/S2/317:319,
1/S2/332:333		No text annotation
IL_9KN6_0201/S2/359:364,
1/S2/396:403		No text annotation
IL_9KN6_0211/S2/366:371,
1/S2/393:394		No text annotation
IL_9KN6_0221/S2/411:413,
1/S2/424:429		No text annotation
IL_9KN6_0231/S2/437:439,
1/S2/454:456		No text annotation
IL_9KN6_0241/S2/459:461,
1/S2/468:470		No text annotation
IL_9KN6_0251/S2/487:489,
1/S2/511:512		No text annotation
IL_9KN6_0261/S2/491:495,
1/S2/508:509		No text annotation
IL_9KN6_0271/S2/495:496,
1/S2/506:508		No text annotation
IL_9KN6_0281/S2/529:531,
1/S2/553:556		No text annotation
IL_9KN6_0311/S2/563:565,
1/S2/585:592		No text annotation
IL_9KN6_0321/S2/566:569,
1/S2/581:584		No text annotation
IL_9KN6_0331/S2/599:606,
1/S2/636:637		No text annotation
IL_9KN6_0341/S2/606:608,
1/S2/635:636		No text annotation
IL_9KN6_0351/S2/611:617,
1/S2/624:632		No text annotation
IL_9KN6_0361/S2/663:665,
1/S2/1162:1164		No text annotation
IL_9KN6_0371/S2/665:671,
1/S2/1161:1162		No text annotation
IL_9KN6_0381/S2/673:675,
1/S2/1030:1032		No text annotation
IL_9KN6_0391/S2/676:680,
1/S2/1025:1029		No text annotation
IL_9KN6_0431/S2/802:803,
1/S2/860:863		No text annotation
IL_9KN6_0441/S2/805:807,
1/S2/856:858		No text annotation
IL_9KN6_0451/S2/807:815,
1/S2/849:856		No text annotation
IL_9KN6_0461/S2/874:876,
1/S2/910:912		No text annotation
IL_9KN6_0471/S2/877:879,
1/S2/907:909		No text annotation
IL_9KN6_0481/S2/922:923,
1/S2/1019:1022		No text annotation
IL_9KN6_0491/S2/925:926,
1/S2/1015:1017		No text annotation
IL_9KN6_0501/S2/927:931,
1/S2/1010:1014		No text annotation
IL_9KN6_0511/S2/931:935,
1/S2/1007:1010		No text annotation
IL_9KN6_0521/S2/942:945,
1/S2/981:984		No text annotation
IL_9KN6_0531/S2/952:956,
1/S2/967:974		No text annotation
IL_9KN6_0541/S2/1042:1047,
1/S2/1071:1073		No text annotation
IL_9KN6_0551/S2/1047:1051,
1/S2/1067:1071		No text annotation
IL_9KN6_0561/S2/1091:1093,
1/S2/1152:1158		No text annotation
IL_9KN6_0571/S2/1098:1101,
1/S2/1131:1134		No text annotation
IL_9KN6_0581/S2/1101:1103,
1/S2/1129:1131		No text annotation
IL_9KN6_0591/S2/1108:1110,
1/S2/1123:1124		No text annotation
IL_9KN6_0601/S2/1168:1175,
1/S2/1186:1191		No text annotation
IL_9KN6_0611/S2/1203:1204,
1/S2/1694:1696		No text annotation
IL_9KN6_0621/S2/1206:1208,
1/S2/1691:1692		No text annotation
IL_9KN6_0631/S2/1214:1217,
1/S2/1681:1685		No text annotation
IL_9KN6_0641/S2/1230:1232,
1/S2/1526:1528		No text annotation
IL_9KN6_0651/S2/1235:1236,
1/S2/1521:1523		No text annotation
IL_9KN6_0661/S2/1270:1272,
1/S2/1510:1512		No text annotation
IL_9KN6_0691/S2/1325:1327,
1/S2/1502:1503		No text annotation
IL_9KN6_0701/S2/1329:1333,
1/S2/1498:1500		No text annotation
IL_9KN6_0711/S2/1329:1335,
1/S2/1492:1500		No text annotation
IL_9KN6_0721/S2/1333:1335,
1/S2/1492:1498		No text annotation
IL_9KN6_0731/S2/1337:1338,
1/S2/1488:1490		No text annotation
IL_9KN6_0741/S2/1347:1349,
1/S2/1380:1382		No text annotation
IL_9KN6_0751/S2/1363:1365,
1/S2/1374:1375		No text annotation
IL_9KN6_0761/S2/1395:1399,
1/S2/1447:1450		No text annotation
IL_9KN6_0771/S2/1402:1405,
1/S2/1441:1444		No text annotation
IL_9KN6_0781/S2/1408:1409,
1/S2/1432:1438		No text annotation
IL_9KN6_0791/S2/1412:1413,
1/S2/1427:1429		No text annotation
IL_9KN6_0801/S2/1537:1539,
1/S2/1594:1596		No text annotation
IL_9KN6_0811/S2/1541:1550,
1/S2/1582:1592		No text annotation
IL_9KN6_0821/S2/1550:1558,
1/S2/1577:1582		No text annotation
IL_9KN6_0831/S2/1560:1562,
1/S2/1573:1575		No text annotation
IL_9KN6_0841/S2/1604:1610,
1/S2/1629:1635		No text annotation
IL_9KN6_0851/S2/1700:1702,
1/S2/1833:1836		No text annotation
IL_9KN6_0861/S2/1702:1705,
1/S2/1829:1833		No text annotation
IL_9KN6_0871/S2/1706:1708,
1/S2/1826:1828		No text annotation
IL_9KN6_0881/S2/1708:1711,
1/S2/1822:1826		No text annotation
IL_9KN6_0891/S2/1714:1716,
1/S2/1817:1819		No text annotation
IL_9KN6_0901/S2/1717:1720,
1/S2/1813:1816		No text annotation
IL_9KN6_0921/S2/1729:1731,
1/S2/1803:1805		No text annotation
IL_9KN6_0931/S2/1733:1736,
1/S2/1798:1801		No text annotation
IL_9KN6_0941/S2/1739:1741,
1/S2/1793:1795		No text annotation
IL_9KN6_0951/S2/1742:1746,
1/S2/1788:1792		No text annotation
IL_9KN6_0961/S2/1750:1756,
1/S2/1776:1784		No text annotation
IL_9KN6_0981/zz/47:49,
1/zz/114:115		No text annotation
IL_9KN6_1011/zz/62:65,
1/zz/102:105		No text annotation
IL_9KN6_1021/zz/67:69,
1/zz/98:100		No text annotation
IL_9KN6_1031/zz/70:75,
1/zz/91:97		No text annotation
IL_9KN6_1041/zz/134:137,
1/zz/287:290		No text annotation
IL_9KN6_1111/zz/255:261,
1/zz/272:277		No text annotation

Problematic loops

#loop idProblemSequence
IL_9KN6_019No text annotation
IL_9KN6_029No text annotation
IL_9KN6_030No text annotation
IL_9KN6_040No text annotation
IL_9KN6_041No text annotation
IL_9KN6_042No text annotation
IL_9KN6_067No text annotation
IL_9KN6_068No text annotation
IL_9KN6_091No text annotation
IL_9KN6_097No text annotation
IL_9KN6_099No text annotation
IL_9KN6_100No text annotation
IL_9KN6_105No text annotation
IL_9KN6_106No text annotation
IL_9KN6_107No text annotation
IL_9KN6_108No text annotation
IL_9KN6_109No text annotation
IL_9KN6_110No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9KN6_0011/S2/40:41,
1/S2/481:487,
1/S2/512:514		No text annotation
J3_9KN6_0021/S2/40:47,
1/S2/479:487,
1/S2/512:514		No text annotation
J3_9KN6_0031/S2/223:238,
1/S2/280:288,
1/S2/295:298		No text annotation
J3_9KN6_0041/S2/682:685,
1/S2/917:922,
1/S2/1022:1023		No text annotation
J3_9KN6_0051/S2/682:685,
1/S2/917:923,
1/S2/1019:1023		No text annotation
J3_9KN6_0061/S2/816:819,
1/S2/829:831,
1/S2/843:848		No text annotation
J3_9KN6_0071/S2/938:941,
1/S2/985:993,
1/S2/1000:1004		No text annotation
J3_9KN6_0081/S2/1094:1096,
1/S2/1136:1140,
1/S2/1147:1151		No text annotation
J3_9KN6_0091/S2/1218:1221,
1/S2/1645:1651,
1/S2/1673:1680		No text annotation
J3_9KN6_0101/S2/1223:1228,
1/S2/1530:1532,
1/S2/1638:1643		No text annotation
J3_9KN6_0111/S2/1237:1244,
1/S2/1255:1266,
1/S2/1516:1520		No text annotation
J3_9KN6_0121/S2/1272:1277,
1/S2/1320:1324,
1/S2/1504:1510		No text annotation
J3_9KN6_0131/S2/1340:1345,
1/S2/1384:1389,
1/S2/1481:1486		No text annotation
J3_9KN6_0141/S2/1350:1351,
1/S2/1360:1363,
1/S2/1375:1379		No text annotation
J3_9KN6_0151/S2/1391:1395,
1/S2/1450:1456,
1/S2/1470:1479		No text annotation
J3_9KN6_0161/S2/1532:1536,
1/S2/1597:1604,
1/S2/1635:1638		No text annotation
J3_9KN6_0171/zy/7:26,
1/zy/42:48,
1/zy/64:65		No text annotation
J4_9KN6_0011/S2/98:106,
1/S2/355:357,
1/S2/405:409,
1/S2/431:432		No text annotation
J4_9KN6_0021/S2/671:673,
1/S2/1032:1037,
1/S2/1078:1089,
1/S2/1160:1161		No text annotation
J4_9KN6_0031/zz/133:134,
1/zz/290:291,
1/zz/302:303,
1/zz/314:315		No text annotation
J4_9KN6_0051/zz/153:156,
1/zz/171:172,
1/zz/227:229,
1/zz/238:239		No text annotation
J5_9KN6_0011/S2/30:34,
1/S2/521:527,
1/S2/558:563,
1/S2/592:595,
1/S2/641:644		No text annotation
J5_9KN6_0021/S2/30:34,
1/S2/521:527,
1/S2/558:565,
1/S2/585:595,
1/S2/641:644		No text annotation
J5_9KN6_0031/S2/53:56,
1/S2/89:96,
1/S2/434:436,
1/S2/457:459,
1/S2/470:474		No text annotation
J5_9KN6_0041/S2/125:129,
1/S2/183:185,
1/S2/214:215,
1/S2/310:312,
1/S2/337:338		No text annotation

Problematic loops

#loop idProblemSequence
J4_9KN6_004No text annotation

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