HL_9KN6_025

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9KN6|1|S2|U|1300, 9KN6|1|S2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN6|1|S2|A|1295
9KN6|1|S2|U|1296
9KN6|1|S2|U|1297
9KN6|1|S2|G|1298
9KN6|1|S2|A|1299
9KN6|1|S2|U|1300
9KN6|1|S2|A|1301
9KN6|1|S2|G|1302
9KN6|1|S2|C|1303
9KN6|1|S2|U|1304

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S29

Chain sh

Ubiquitin-40S ribosomal protein S27a