HL_9KN6_035
3D structure
- PDB id
- 9KN6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9KN6_035 not in the Motif Atlas
- Homologous match to HL_6UFG_007
- Geometric discrepancy: 0.1582
- The information below is about HL_6UFG_007
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9KN6|1|zy|G|30
9KN6|1|zy|C|31
9KN6|1|zy|C|32
9KN6|1|zy|C|33
9KN6|1|zy|A|34
9KN6|1|zy|U|35
9KN6|1|zy|A|36
9KN6|1|zy|A|37
9KN6|1|zy|C|38
Current chains
- Chain zy
- Initiator Met-tRNA-i
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SQ
- 40S ribosomal protein S16
- Chain zz
- Internal ribosome entry site; IRES
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