HL_9KN6_039

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCCUUUCUUGGAUCAACC

Length

19 nucleotides

Bulged bases

9KN6|1|zz|U|194, 9KN6|1|zz|U|195, 9KN6|1|zz|U|196, 9KN6|1|zz|C|197, 9KN6|1|zz|U|198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN6|1|zz|G|190
9KN6|1|zz|U|191
9KN6|1|zz|C|192
9KN6|1|zz|C|193
9KN6|1|zz|U|194
9KN6|1|zz|U|195
9KN6|1|zz|U|196
9KN6|1|zz|C|197
9KN6|1|zz|U|198
9KN6|1|zz|U|199
9KN6|1|zz|G|200
9KN6|1|zz|G|201
9KN6|1|zz|A|202
9KN6|1|zz|U|203
9KN6|1|zz|C|204
9KN6|1|zz|A|205
9KN6|1|zz|A|206
9KN6|1|zz|C|207
9KN6|1|zz|C|208

Current chains

Chain zz

HCV-IRES RNA

Nearby chains

Chain 3a

Eukaryotic translation initiation factor 3 subunit A

Chain 3c

Eukaryotic translation initiation factor 3 subunit C

Chain 3h

Eukaryotic translation initiation factor 3 subunit H