HL_9KZU_005

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9KZU|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KZU_005 not in the Motif Atlas

Homologous match to HL_8GLP_005

Geometric discrepancy: 0.2341

The information below is about HL_8GLP_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

25

Unit IDs

9KZU|1|L5|U|204
9KZU|1|L5|C|205
9KZU|1|L5|U|206
9KZU|1|L5|G|207
9KZU|1|L5|A|208
9KZU|1|L5|U|209
9KZU|1|L5|C|210
9KZU|1|L5|G|211

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32