HL_9KZU_021

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9KZU|1|L5|U|1596, 9KZU|1|L5|A|1600, 9KZU|1|L5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|A|1593
9KZU|1|L5|C|1594
9KZU|1|L5|G|1595
9KZU|1|L5|U|1596
9KZU|1|L5|G|1597
9KZU|1|L5|C|1598
9KZU|1|L5|A|1599
9KZU|1|L5|A|1600
9KZU|1|L5|A|1601
9KZU|1|L5|U|1602

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37

Chain zx

nascent peptide