HL_9KZU_028

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

9KZU|1|L5|A|1984

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|C|1978
9KZU|1|L5|A|1979
9KZU|1|L5|U|1980
9KZU|1|L5|G|1981
9KZU|1|L5|G|1982
9KZU|1|L5|A|1983
9KZU|1|L5|A|1984
9KZU|1|L5|G|1985
9KZU|1|L5|U|1986
9KZU|1|L5|C|1987
9KZU|1|L5|G|1988

Current chains

Chain L5

28S ribosomal RNA

Nearby chains