HL_9KZU_035

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGCGAUGGCCUCCGUUGCC

Length

19 nucleotides

Bulged bases

9KZU|1|L5|U|2485, 9KZU|1|L5|C|2488, 9KZU|1|L5|C|2489, 9KZU|1|L5|U|2490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|G|2480
9KZU|1|L5|G|2481
9KZU|1|L5|C|2482
9KZU|1|L5|G|2483
9KZU|1|L5|A|2484
9KZU|1|L5|U|2485
9KZU|1|L5|G|2486
9KZU|1|L5|G|2487
9KZU|1|L5|C|2488
9KZU|1|L5|C|2489
9KZU|1|L5|U|2490
9KZU|1|L5|C|2491
9KZU|1|L5|C|2492
9KZU|1|L5|G|2493
9KZU|1|L5|U|2494
9KZU|1|L5|U|2495
9KZU|1|L5|G|2496
9KZU|1|L5|C|2497
9KZU|1|L5|C|2498

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LX

60S ribosomal protein L23a