HL_9KZU_036

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

9KZU|1|L5|U|2530, 9KZU|1|L5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KZU_036 not in the Motif Atlas

Homologous match to HL_9PN5_034

Geometric discrepancy: 0.1426

The information below is about HL_9PN5_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

9KZU|1|L5|G|2523
9KZU|1|L5|U|2524
9KZU|1|L5|U|2525
9KZU|1|L5|C|2526
9KZU|1|L5|A|2527
9KZU|1|L5|G|2528
9KZU|1|L5|A|2529
9KZU|1|L5|U|2530
9KZU|1|L5|C|2531
9KZU|1|L5|C|2532

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a

Chain Lg

60S ribosomal protein L34