HL_9KZU_050

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGUAACUAUGACUC

Length

16 nucleotides

Bulged bases

9KZU|1|L5|G|3757, 9KZU|1|L5|A|3760, 9KZU|1|L5|A|3766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|G|3754
9KZU|1|L5|G|3755
9KZU|1|L5|A|3756
9KZU|1|L5|G|3757
9KZU|1|L5|U|3758
9KZU|1|L5|A|3759
9KZU|1|L5|A|3760
9KZU|1|L5|C|3761
9KZU|1|L5|U|3762
9KZU|1|L5|A|3763
9KZU|1|L5|U|3764
9KZU|1|L5|G|3765
9KZU|1|L5|A|3766
9KZU|1|L5|C|3767
9KZU|1|L5|U|3768
9KZU|1|L5|C|3769

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain zy

Transfer RNA; tRNA