HL_9KZU_063

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

9KZU|1|L5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KZU_063 not in the Motif Atlas

Homologous match to HL_9AXU_058

Geometric discrepancy: 0.3798

The information below is about HL_9AXU_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34245.2

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9KZU|1|L5|A|4473
9KZU|1|L5|A|4474
9KZU|1|L5|G|4475
9KZU|1|L5|C|4476
9KZU|1|L5|A|4477
9KZU|1|L5|G|4478
9KZU|1|L5|A|4479
9KZU|1|L5|A|4480
9KZU|1|L5|U|4481
9KZU|1|L5|U|4482

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain Lm

Ubiquitin-60S ribosomal protein L40