HL_9KZU_090

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUCUUUCGAGGC

Length

14 nucleotides

Bulged bases

9KZU|1|S2|C|537, 9KZU|1|S2|C|539, 9KZU|1|S2|U|542

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|S2|G|535
9KZU|1|S2|A|536
9KZU|1|S2|C|537
9KZU|1|S2|U|538
9KZU|1|S2|C|539
9KZU|1|S2|U|540
9KZU|1|S2|U|541
9KZU|1|S2|U|542
9KZU|1|S2|C|543
9KZU|1|S2|G|544
9KZU|1|S2|A|545
9KZU|1|S2|G|546
9KZU|1|S2|G|547
9KZU|1|S2|C|548

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain Se

40S ribosomal protein S30