HL_9KZU_096

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|S2|A|957
9KZU|1|S2|G|958
9KZU|1|S2|G|959
9KZU|1|S2|U|960
9KZU|1|S2|G|961
9KZU|1|S2|A|962
9KZU|1|S2|A|963
9KZU|1|S2|A|964
9KZU|1|S2|U|965
9KZU|1|S2|U|966

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SO

40S ribosomal protein S14

Chain zv

mRNA