HL_9KZU_103
3D structure
- PDB id
- 9KZU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUC
- Length
- 36 nucleotides
- Bulged bases
- 9KZU|1|S2|G|1285, 9KZU|1|S2|C|1292, 9KZU|1|S2|A|1293, 9KZU|1|S2|U|1300, 9KZU|1|S2|U|1306, 9KZU|1|S2|U|1314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KZU|1|S2|G|1281
9KZU|1|S2|A|1282
9KZU|1|S2|C|1283
9KZU|1|S2|A|1284
9KZU|1|S2|G|1285
9KZU|1|S2|G|1286
9KZU|1|S2|A|1287
9KZU|1|S2|U|1288
9KZU|1|S2|U|1289
9KZU|1|S2|G|1290
9KZU|1|S2|A|1291
9KZU|1|S2|C|1292
9KZU|1|S2|A|1293
9KZU|1|S2|G|1294
9KZU|1|S2|A|1295
9KZU|1|S2|U|1296
9KZU|1|S2|U|1297
9KZU|1|S2|G|1298
9KZU|1|S2|A|1299
9KZU|1|S2|U|1300
9KZU|1|S2|A|1301
9KZU|1|S2|G|1302
9KZU|1|S2|C|1303
9KZU|1|S2|U|1304
9KZU|1|S2|C|1305
9KZU|1|S2|U|1306
9KZU|1|S2|U|1307
9KZU|1|S2|U|1308
9KZU|1|S2|C|1309
9KZU|1|S2|U|1310
9KZU|1|S2|C|1311
9KZU|1|S2|G|1312
9KZU|1|S2|A|1313
9KZU|1|S2|U|1314
9KZU|1|S2|U|1315
9KZU|1|S2|C|1316
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SK
- 40S ribosomal protein S10
- Chain SP
- 40S ribosomal protein S15
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- 40S ribosomal protein S12
- Chain sh
- Ubiquitin-40S ribosomal protein S27a
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