HL_9KZU_105

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9KZU|1|S2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KZU_105 not in the Motif Atlas

Homologous match to HL_9PN5_104

Geometric discrepancy: 0.1363

The information below is about HL_9PN5_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9KZU|1|S2|G|1366
9KZU|1|S2|U|1367
9KZU|1|S2|U|1368
9KZU|1|S2|A|1369
9KZU|1|S2|A|1370
9KZU|1|S2|U|1371
9KZU|1|S2|U|1372
9KZU|1|S2|C|1373

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SR

40S ribosomal protein S17