HL_9KZU_111

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGGGUCGGCCCACGGCCCUGG

Length

22 nucleotides

Bulged bases

9KZU|1|S2|C|1762, 9KZU|1|S2|G|1763, 9KZU|1|S2|G|1764, 9KZU|1|S2|C|1765, 9KZU|1|S2|C|1766, 9KZU|1|S2|C|1767, 9KZU|1|S2|A|1768, 9KZU|1|S2|C|1769, 9KZU|1|S2|G|1770, 9KZU|1|S2|C|1773

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|S2|C|1756
9KZU|1|S2|G|1757
9KZU|1|S2|G|1758
9KZU|1|S2|G|1759
9KZU|1|S2|G|1760
9KZU|1|S2|U|1761
9KZU|1|S2|C|1762
9KZU|1|S2|G|1763
9KZU|1|S2|G|1764
9KZU|1|S2|C|1765
9KZU|1|S2|C|1766
9KZU|1|S2|C|1767
9KZU|1|S2|A|1768
9KZU|1|S2|C|1769
9KZU|1|S2|G|1770
9KZU|1|S2|G|1771
9KZU|1|S2|C|1772
9KZU|1|S2|C|1773
9KZU|1|S2|C|1774
9KZU|1|S2|U|1775
9KZU|1|S2|G|1776
9KZU|1|S2|G|1777

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LW

60S ribosomal protein L24