HL_9KZU_114

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUAGGGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KZU_114 not in the Motif Atlas

Homologous match to HL_9MTS_102

Geometric discrepancy: 0.1326

The information below is about HL_9MTS_102

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

9KZU|1|zy|C|30
9KZU|1|zy|U|31
9KZU|1|zy|U|32
9KZU|1|zy|A|33
9KZU|1|zy|G|34
9KZU|1|zy|G|35
9KZU|1|zy|G|36
9KZU|1|zy|U|37
9KZU|1|zy|G|38

Current chains

Chain zy

P-site tRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SP

40S ribosomal protein S15

Chain SQ

40S ribosomal protein S16

Chain zv

mRNA