HL_9KZU_117

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCCUUUCUUGGAUCAACC

Length

19 nucleotides

Bulged bases

9KZU|1|zz|U|195, 9KZU|1|zz|U|196, 9KZU|1|zz|C|197, 9KZU|1|zz|U|198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|zz|G|190
9KZU|1|zz|U|191
9KZU|1|zz|C|192
9KZU|1|zz|C|193
9KZU|1|zz|U|194
9KZU|1|zz|U|195
9KZU|1|zz|U|196
9KZU|1|zz|C|197
9KZU|1|zz|U|198
9KZU|1|zz|U|199
9KZU|1|zz|G|200
9KZU|1|zz|G|201
9KZU|1|zz|A|202
9KZU|1|zz|U|203
9KZU|1|zz|C|204
9KZU|1|zz|A|205
9KZU|1|zz|A|206
9KZU|1|zz|C|207
9KZU|1|zz|C|208

Current chains

Chain zz

HCV IRES

Nearby chains

Chain 3a

Eukaryotic translation initiation factor 3 subunit A

Chain 3c

Eukaryotic translation initiation factor 3 subunit C

Chain 3h

Eukaryotic translation initiation factor 3 subunit H