HL_9KZX_020

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9KZX|1|L5|U|1596, 9KZX|1|L5|A|1600, 9KZX|1|L5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KZX_020 not in the Motif Atlas

Homologous match to HL_9AXU_018

Geometric discrepancy: 0.1646

The information below is about HL_9AXU_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.4

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

13

Unit IDs

9KZX|1|L5|A|1593
9KZX|1|L5|C|1594
9KZX|1|L5|G|1595
9KZX|1|L5|U|1596
9KZX|1|L5|G|1597
9KZX|1|L5|C|1598
9KZX|1|L5|A|1599
9KZX|1|L5|A|1600
9KZX|1|L5|A|1601
9KZX|1|L5|U|1602

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37

Chain zx

nascent chain