HL_9KZX_043

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

9KZX|1|L5|A|3642, 9KZX|1|L5|A|3643, 9KZX|1|L5|U|3644, 9KZX|1|L5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|U|3639
9KZX|1|L5|U|3640
9KZX|1|L5|U|3641
9KZX|1|L5|A|3642
9KZX|1|L5|A|3643
9KZX|1|L5|U|3644
9KZX|1|L5|U|3645
9KZX|1|L5|A|3646
9KZX|1|L5|A|3647
9KZX|1|L5|A|3648
9KZX|1|L5|A|3649

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37

Chain zx

nascent chain