HL_9L0R_094

3D structure

PDB id

9L0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptococcus agalactiae GOLLD RNA dodecamer

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

UACCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9L0R_094 not in the Motif Atlas

Geometric match to HL_5O7H_001

Geometric discrepancy: 0.2659

The information below is about HL_5O7H_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

9L0R|1|F|U|306
9L0R|1|F|A|307
9L0R|1|F|C|308
9L0R|1|F|C|309
9L0R|1|F|A|310
9L0R|1|F|G|311

Current chains

Chain F

RNA (700-MER)

Nearby chains

Chain E

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA