HL_9L0R_143

3D structure

PDB id

9L0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptococcus agalactiae GOLLD RNA dodecamer

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

GGUGGUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9L0R_143 not in the Motif Atlas

Geometric match to HL_5UD5_002

Geometric discrepancy: 0.2868

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9L0R|1|I|G|232
9L0R|1|I|G|233
9L0R|1|I|U|234
9L0R|1|I|G|235
9L0R|1|I|G|236
9L0R|1|I|U|237
9L0R|1|I|A|238
9L0R|1|I|C|239

Current chains

Chain I

RNA (700-MER)

Nearby chains

Chain J

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA