HL_9L12_001

3D structure

PDB id

9L12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cas12h ternary complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

CGCUAG

Length

6 nucleotides

Bulged bases

9L12|1|D|C|17

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9L12_001 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.325

The information below is about HL_2NUE_001

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

9L12|1|D|C|15
9L12|1|D|G|16
9L12|1|D|C|17
9L12|1|D|U|18
9L12|1|D|A|19
9L12|1|D|G|20

Current chains

Chain D

RNA (56-MER)

Nearby chains

Chain A

Cas12h