HL_9L6Y_002

3D structure

PDB id

9L6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the L7Ae derivative protein LS12 in complex with its co-evolved target CS2 RNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9L6Y_002 not in the Motif Atlas

Geometric match to HL_5VW1_003

Geometric discrepancy: 0.1825

The information below is about HL_5VW1_003

Detailed Annotation

GNRA with GA tSW pair

Broad Annotation

GNRA with GA tSW pair

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9L6Y|1|D|C|13
9L6Y|1|D|G|14
9L6Y|1|D|A|15
9L6Y|1|D|A|16
9L6Y|1|D|A|17
9L6Y|1|D|G|18

Current chains

Chain D

CS2 RNA

Nearby chains