HL_9M6C_003

3D structure

PDB id

9M6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of xanthine/guanine RNA aptamer with xanthine

Experimental method

X-RAY DIFFRACTION

Resolution

2.51 Å

Loop

Sequence

CUAG

Length

4 nucleotides

Bulged bases

9M6C|1|C|U|17

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9M6C_003 not in the Motif Atlas

Geometric match to HL_8OI5_004

Geometric discrepancy: 0.1297

The information below is about HL_8OI5_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72836.1

Basepair signature

cWW-F

Number of instances in this motif group

20

Unit IDs

9M6C|1|C|C|16
9M6C|1|C|U|17
9M6C|1|C|A|18
9M6C|1|C|G|19

Current chains

Chain C

RNA (32-MER)

Nearby chains

Chain A

RNA (32-MER)