HL_9MDS_007

3D structure

PDB id

9MDS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ROOL RNA nanocage (env-120)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAUUGGUAACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MDS_007 not in the Motif Atlas

Geometric match to HL_4UYK_001

Geometric discrepancy: 0.2486

The information below is about HL_4UYK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14063.2

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9MDS|1|A|A|303
9MDS|1|A|A|304
9MDS|1|A|U|305
9MDS|1|A|U|306
9MDS|1|A|G|307
9MDS|1|A|G|308
9MDS|1|A|U|309
9MDS|1|A|A|310
9MDS|1|A|A|311
9MDS|1|A|C|312
9MDS|1|A|U|313

Current chains

Chain A

RNA (598-MER)

Nearby chains

Chain B

RNA (598-MER)