HL_9MDS_015

3D structure

PDB id

9MDS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ROOL RNA nanocage (env-120)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUAAUCAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MDS_015 not in the Motif Atlas

Geometric match to HL_4R4V_001

Geometric discrepancy: 0.1769

The information below is about HL_4R4V_001

Detailed Annotation

Anticodon loop related

Broad Annotation

Varkud satellite (VS) ribozyme

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

9MDS|1|B|U|35
9MDS|1|B|C|36
9MDS|1|B|U|37
9MDS|1|B|A|38
9MDS|1|B|A|39
9MDS|1|B|U|40
9MDS|1|B|C|41
9MDS|1|B|A|42
9MDS|1|B|A|43

Current chains

Chain B

RNA (598-MER)

Nearby chains

Chain C

RNA (598-MER)