HL_9MDS_083
3D structure
- PDB id
- 9MDS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ROOL RNA nanocage (env-120)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGUUGCUAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9MDS_083 not in the Motif Atlas
- Geometric match to HL_4UYK_001
- Geometric discrepancy: 0.3226
- The information below is about HL_4UYK_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9MDS|1|F|G|560
9MDS|1|F|A|561
9MDS|1|F|G|562
9MDS|1|F|U|563
9MDS|1|F|U|564
9MDS|1|F|G|565
9MDS|1|F|C|566
9MDS|1|F|U|567
9MDS|1|F|A|568
9MDS|1|F|A|569
9MDS|1|F|C|570
Current chains
- Chain F
- RNA (598-MER)
Nearby chains
- Chain A
- RNA (598-MER)
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