HL_9MDS_100

3D structure

PDB id

9MDS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ROOL RNA nanocage (env-120)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MDS_100 not in the Motif Atlas

Geometric match to HL_9M86_002

Geometric discrepancy: 0.328

The information below is about HL_9M86_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9MDS|1|H|U|68
9MDS|1|H|C|69
9MDS|1|H|A|70
9MDS|1|H|A|71
9MDS|1|H|A|72
9MDS|1|H|A|73
9MDS|1|H|G|74

Current chains

Chain H

RNA (598-MER)

Nearby chains

Chain E

RNA (598-MER)