HL_9MEE_060

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUGGUUCAC

Length

11 nucleotides

Bulged bases

9MEE|1|C|C|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MEE_060 not in the Motif Atlas

Geometric match to HL_6DME_003

Geometric discrepancy: 0.3236

The information below is about HL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9MEE|1|C|G|722
9MEE|1|C|A|723
9MEE|1|C|G|724
9MEE|1|C|U|725
9MEE|1|C|G|726
9MEE|1|C|G|727
9MEE|1|C|U|728
9MEE|1|C|U|729
9MEE|1|C|C|730
9MEE|1|C|A|731
9MEE|1|C|C|732

Current chains

Chain C

GOLLD RNA nanocage

Nearby chains