HL_9MEE_159

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAGGGAUA

Length

8 nucleotides

Bulged bases

9MEE|1|H|A|409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MEE_159 not in the Motif Atlas

Geometric match to HL_4V83_220

Geometric discrepancy: 0.3481

The information below is about HL_4V83_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9MEE|1|H|U|408
9MEE|1|H|A|409
9MEE|1|H|G|410
9MEE|1|H|G|411
9MEE|1|H|G|412
9MEE|1|H|A|413
9MEE|1|H|U|414
9MEE|1|H|A|415

Current chains

Chain H

GOLLD RNA nanocage

Nearby chains

Chain I

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA