HL_9MKK_003

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MKK_003 not in the Motif Atlas

Geometric match to HL_6UFH_005

Geometric discrepancy: 0.195

The information below is about HL_6UFH_005

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9MKK|1|A|G|158
9MKK|1|A|G|159
9MKK|1|A|A|160
9MKK|1|A|A|161
9MKK|1|A|A|162
9MKK|1|A|C|163

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20