9MKK Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9MKK_001 | 1/A/12:22 | No text annotation | geometric HL_4LFB_001 HL_31940.1 | |
| HL_9MKK_003 | 1/A/158:163 | GNRA | geometric HL_6UFH_005 NA | |
| HL_9MKK_004 | 1/A/186:191 | GNRA | geometric HL_1U9S_002 NA | |
| HL_9MKK_005 | 1/A/259:267 | GNRA related | geometric HL_5J7L_006 NA | |
| HL_9MKK_006 | 1/A/296:301 | GNRA | geometric HL_5J7L_007 NA | |
| HL_9MKK_007 | 1/A/320:333 | No text annotation | geometric HL_5J7L_008 NA | |
| HL_9MKK_008 | 1/A/342:347 | UNCG | geometric HL_8CRE_201 HL_61337.1 | |
| HL_9MKK_009 | 1/A/379:384 | GNRA | geometric HL_4V9F_020 HL_34789.1 | |
| HL_9MKK_010 | 1/A/419:425 | No text annotation | ||
| HL_9MKK_011 | 1/A/461:471 | No text annotation | ||
| HL_9MKK_012 | 1/A/617:623 | GNRA-like with tWH | geometric HL_5J7L_014 NA | |
| HL_9MKK_013 | 1/A/684:706 | No text annotation | ||
| HL_9MKK_014 | 1/A/726:731 | GNRA | geometric HL_8CRE_211 HL_34789.1 | |
| HL_9MKK_015 | 1/A/786:796 | No text annotation | geometric HL_5J7L_017 NA | |
| HL_9MKK_016 | 1/A/862:867 | GNRA | geometric HL_5J7L_019 NA | |
| HL_9MKK_017 | 1/A/897:902 | GNRA | geometric HL_8CRE_215 HL_34789.1 | |
| HL_9MKK_018 | 1/A/1011:1018 | No text annotation | ||
| HL_9MKK_019 | 1/A/1076:1081 | GNRA | geometric HL_5J7L_027 NA | |
| HL_9MKK_020 | 1/A/1089:1096 | T-loop related | geometric HL_8CRE_219 HL_63894.1 | |
| HL_9MKK_021 | 1/A/1134:1141 | No text annotation | ||
| HL_9MKK_022 | 1/A/1165:1171 | GNRA | geometric HL_5J7L_019 NA | |
| HL_9MKK_024 | 1/A/1309:1328 | No text annotation | ||
| HL_9MKK_025 | 1/A/1356:1366 | No text annotation | ||
| HL_9MKK_026 | 1/A/1449:1454 | No text annotation | ||
| HL_9MKK_027 | 1/A/1515:1520 | GNRA | geometric HL_5J7L_031 NA | |
| HL_9MKK_028 | 1/Z/13:22 | tRNA D-loop | geometric HL_1QF6_001 NA | |
| HL_9MKK_029 | 1/Z/31:39 | tRNA anticodon loop | geometric HL_9MTS_102 HL_81376.1 | |
| HL_9MKK_030 | 1/Z/53:61 | T-loop with 2 stacked bulged bases | geometric HL_7LYF_003 NA | |
| HL_9MKK_031 | 1/a/59:68 | No text annotation | ||
| HL_9MKK_032 | 1/a/87:95 | No text annotation | geometric HL_5J7L_135 NA | |
| HL_9MKK_033 | 1/a/123:128 | No text annotation | geometric HL_5J7L_136 NA | |
| HL_9MKK_034 | 1/a/137:142 | UNCG | geometric HL_7KKV_002 HL_61337.1 | |
| HL_9MKK_035 | 1/a/158:168 | No text annotation | geometric HL_5J7L_138 NA | |
| HL_9MKK_036 | 1/a/194:201 | No text annotation | geometric HL_8CRE_001 NA | |
| HL_9MKK_037 | 1/a/225:230 | No text annotation | geometric HL_5J7L_140 NA | |
| HL_9MKK_038 | 1/a/246:252 | No text annotation | geometric HL_9DFE_007 HL_76371.1 | |
| HL_9MKK_039 | 1/a/305:312 | T-loop with 2 bulged bases not stacked | geometric HL_6DN2_003 HL_13999.1 | |
| HL_9MKK_040 | 1/a/319:323 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_9MKK_041 | 1/a/327:335 | T-loop with unstacked turn | geometric HL_5J7L_144 NA | |
| HL_9MKK_042 | 1/a/382:392 | No text annotation | geometric HL_5J7L_145 NA | |
| HL_9MKK_043 | 1/a/410:417 | Pseudoknot geometry | geometric HL_7A0S_014 HL_30680.4 | |
| HL_9MKK_044 | 1/a/462:467 | GNRA | geometric HL_4WFL_003 HL_34789.1 | |
| HL_9MKK_045 | 1/a/487:493 | GNRA | geometric HL_5J7L_148 NA | |
| HL_9MKK_047 | 1/a/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 NA | |
| HL_9MKK_048 | 1/a/611:617 | GNRA | geometric HL_7KKV_003 HL_34789.1 | |
| HL_9MKK_049 | 1/a/629:634 | GNRA | geometric HL_5J7L_152 NA | |
| HL_9MKK_050 | 1/a/641:647 | GNRA | geometric HL_1U9S_001 NA | |
| HL_9MKK_051 | 1/a/712:719 | GNRA wlth tandem sheared | geometric HL_5J7L_154 NA | |
| HL_9MKK_052 | 1/a/779:785 | No text annotation | geometric HL_5J7L_156 NA | |
| HL_9MKK_053 | 1/a/826:831 | No text annotation | geometric HL_4WF9_025 HL_27530.1 | |
| HL_9MKK_054 | 1/a/885:891 | No text annotation | ||
| HL_9MKK_055 | 1/a/978:985 | No text annotation | geometric HL_5J7L_160 NA | |
| HL_9MKK_056 | 1/a/1222:1227 | GNRA | geometric HL_4WF9_031 HL_34789.1 | |
| HL_9MKK_057 | 1/a/1281:1289 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_165 NA | |
| HL_9MKK_058 | 1/a/1324:1330 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_166 NA | |
| HL_9MKK_059 | 1/a/1363:1368 | GNRA | geometric HL_5J7L_167 NA | |
| HL_9MKK_060 | 1/a/1389:1398 | No text annotation | geometric HL_5J7L_168 NA | |
| HL_9MKK_061 | 1/a/1451:1459 | Mini UNCG with extended bulge | geometric HL_5J7L_169 NA | |
| HL_9MKK_062 | 1/a/1492:1498 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 NA | |
| HL_9MKK_064 | 1/a/1565:1568 | Mini UNCG | geometric HL_5J7L_172 NA | |
| HL_9MKK_065 | 1/a/1630:1636 | GNRA | geometric HL_7WKP_001 NA | |
| HL_9MKK_066 | 1/a/1691:1696 | UNCG | geometric HL_7A0S_042 HL_61337.1 | |
| HL_9MKK_067 | 1/a/1727:1733 | No text annotation | geometric HL_361D_002 NA | |
| HL_9MKK_068 | 1/a/1752:1756 | No text annotation | geometric HL_4V9F_046 HL_80709.4 | |
| HL_9MKK_069 | 1/a/1777:1787 | No text annotation | geometric HL_4V9F_047 HL_87681.1 | |
| HL_9MKK_070 | 1/a/1806:1811 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_9MKK_071 | 1/a/1868:1873 | GNRA | geometric HL_4V9F_009 HL_34789.1 | |
| HL_9MKK_072 | 1/a/1910:1920 | No text annotation | geometric HL_8CRE_047 NA | |
| HL_9MKK_073 | 1/a/1949:1957 | No text annotation | geometric HL_5J7L_182 NA | |
| HL_9MKK_074 | 1/a/2209:2215 | No text annotation | geometric HL_5J7L_185 NA | |
| HL_9MKK_075 | 1/a/2264:2276 | No text annotation | geometric HL_5J7L_187 NA | |
| HL_9MKK_076 | 1/a/2304:2312 | No text annotation | geometric HL_5J7L_219 NA | |
| HL_9MKK_077 | 1/a/2324:2331 | Pseudoknot geometry | geometric HL_5J7L_189 NA | |
| HL_9MKK_078 | 1/a/2356:2361 | GNRA | geometric HL_5J7L_190 NA | |
| HL_9MKK_079 | 1/a/2374:2379 | GNRA | geometric HL_7JNH_001 NA | |
| HL_9MKK_080 | 1/a/2404:2413 | No text annotation | geometric HL_5J7L_192 NA | |
| HL_9MKK_081 | 1/a/2466:2484 | No text annotation | ||
| HL_9MKK_082 | 1/a/2528:2535 | GNRA variation | geometric HL_4WF9_057 HL_46665.1 | |
| HL_9MKK_083 | 1/a/2594:2599 | GNRA | geometric HL_4LFB_028 HL_34789.1 | |
| HL_9MKK_084 | 1/a/2658:2663 | GNRA | geometric HL_5D5L_001 HL_34789.1 | |
| HL_9MKK_085 | 1/a/2701:2706 | Ribsomal LSU H95 | geometric HL_7A0S_064 HL_12125.1 | |
| HL_9MKK_086 | 1/a/2745:2759 | No text annotation | geometric HL_4V9F_068 HL_53269.1 | |
| HL_9MKK_087 | 1/a/2795:2801 | UNCG variation | geometric HL_6VMY_004 NA | |
| HL_9MKK_088 | 1/a/2819:2827 | No text annotation | geometric HL_5J7L_201 NA | |
| HL_9MKK_089 | 1/a/2856:2861 | GNRA | geometric HL_5J7L_202 NA | |
| HL_9MKK_090 | 1/b/34:48 | No text annotation | geometric HL_5J7L_215 NA | |
| HL_9MKK_091 | 1/b/38:44 | No text annotation | geometric HL_9DFE_068 HL_59381.1 | |
| HL_9MKK_092 | 1/b/86:90 | Mini UNCG | geometric HL_5J7L_204 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9MKK_002 | No text annotation | ||
| HL_9MKK_023 | GNRA variation | ||
| HL_9MKK_046 | No text annotation | ||
| HL_9MKK_063 | UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9MKK_001 | 1/A/30:33, 1/A/551:553 | Isolated non-canonical cWW pair | geometric IL_8CRE_130 NA | |
| IL_9MKK_002 | 1/A/44:45, 1/A/396:398 | Single bulged A | geometric IL_5J7L_002 NA | |
| IL_9MKK_003 | 1/A/47:52, 1/A/359:361 | No text annotation | geometric IL_5J7L_003 NA | |
| IL_9MKK_004 | 1/A/54:56, 1/A/356:357 | Minor groove platform | geometric IL_8P9A_377 IL_34520.1 | |
| IL_9MKK_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases | geometric IL_4V9F_021 IL_71421.1 | |
| IL_9MKK_006 | 1/A/67:69, 1/A/99:102 | Minor groove platform with extra cWW | geometric IL_5J7L_006 NA | |
| IL_9MKK_007 | 1/A/70:73, 1/A/97:98 | Minor groove platform | geometric IL_5J7L_007 NA | |
| IL_9MKK_008 | 1/A/75:76, 1/A/93:95 | No text annotation | ||
| IL_9MKK_009 | 1/A/128:131, 1/A/231:233 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 NA | |
| IL_9MKK_010 | 1/A/132:136, 1/A/227:230 | Minor groove platform related | geometric IL_5J7L_010 NA | |
| IL_9MKK_011 | 1/A/144:146, 1/A/176:178 | Isolated cWH basepair | geometric IL_2R1S_002 IL_10892.1 | |
| IL_9MKK_012 | 1/A/147:153, 1/A/168:175 | No text annotation | geometric IL_8P9A_383 IL_24485.1 | |
| IL_9MKK_013 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking | geometric IL_4LFB_011 IL_46174.4 | |
| IL_9MKK_014 | 1/A/249:252, 1/A/274:275 | No text annotation | geometric IL_5J7L_015 NA | |
| IL_9MKK_015 | 1/A/292:293, 1/A/304:308 | C-loop | geometric IL_4LFB_013 IL_06671.1 | |
| IL_9MKK_016 | 1/A/367:369, 1/A/392:393 | Single bulged U | geometric IL_5J7L_017 NA | |
| IL_9MKK_017 | 1/A/371:376, 1/A/387:390 | No text annotation | ||
| IL_9MKK_018 | 1/A/407:419, 1/A/425:435 | No text annotation | ||
| IL_9MKK_020 | 1/A/443:450, 1/A/483:491 | No text annotation | ||
| IL_9MKK_021 | 1/A/450:455, 1/A/477:483 | No text annotation | geometric IL_5J7L_023 NA | |
| IL_9MKK_022 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot | geometric IL_4LFB_020 IL_11411.1 | |
| IL_9MKK_023 | 1/A/569:575, 1/A/880:881 | No text annotation | geometric IL_4LFB_022 IL_20847.1 | |
| IL_9MKK_024 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS | geometric IL_5J7L_027 NA | |
| IL_9MKK_025 | 1/A/594:596, 1/A/644:645 | Major groove platform | geometric IL_9DFE_092 IL_48076.7 | |
| IL_9MKK_026 | 1/A/597:598, 1/A/640:643 | Major groove minor groove platform; mini C-loop | geometric IL_1S03_003 IL_73108.1 | |
| IL_9MKK_027 | 1/A/605:612, 1/A/628:633 | No text annotation | geometric IL_5J7L_030 NA | |
| IL_9MKK_028 | 1/A/654:655, 1/A/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_74641.1 | |
| IL_9MKK_029 | 1/A/658:659, 1/A/746:748 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_9MKK_030 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs | geometric IL_5J7L_033 NA | |
| IL_9MKK_031 | 1/A/673:677, 1/A/713:717 | Triple non-canonical cWW pairs | geometric IL_4LFB_065 IL_71154.1 | |
| IL_9MKK_032 | 1/A/774:778, 1/A/804:805 | Left turn | geometric IL_4LFB_032 IL_29346.3 | |
| IL_9MKK_033 | 1/A/779:783, 1/A/799:803 | tSH-tHW-tHS | geometric IL_5J7L_037 NA | |
| IL_9MKK_034 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_5J7L_038 NA | |
| IL_9MKK_035 | 1/A/922:923, 1/A/1393:1395 | Single bulged A | geometric IL_4LFB_035 IL_14190.1 | |
| IL_9MKK_036 | 1/A/925:927, 1/A/1390:1391 | Single bulged G | geometric IL_5J7L_040 NA | |
| IL_9MKK_037 | 1/A/933:935, 1/A/1380:1384 | Minor groove platform | geometric IL_5J7L_041 NA | |
| IL_9MKK_038 | 1/A/953:954, 1/A/1226:1228 | Minor groove platform | geometric IL_8CRE_447 IL_34520.1 | |
| IL_9MKK_039 | 1/A/998:999, 1/A/1041:1043 | Single stack bend | geometric IL_7QR8_009 NA | |
| IL_9MKK_041 | 1/A/1052:1056, 1/A/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_9MKK_042 | 1/A/1057:1058, 1/A/1199:1203 | Minor groove platform | geometric IL_5J7L_048 NA | |
| IL_9MKK_043 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged A | geometric IL_5J7L_049 NA | |
| IL_9MKK_044 | 1/A/1061:1063, 1/A/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_9MKK_045 | 1/A/1124:1134, 1/A/1141:1149 | No text annotation | ||
| IL_9MKK_046 | 1/A/1243:1258, 1/A/1277:1294 | No text annotation | ||
| IL_9MKK_048 | 1/A/1303:1308, 1/A/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_57885.1 | |
| IL_9MKK_049 | 1/A/1399:1401, 1/A/1501:1504 | No text annotation | geometric IL_8CRE_466 IL_18228.1 | |
| IL_9MKK_050 | 1/A/1401:1404, 1/A/1497:1501 | No text annotation | geometric IL_8P9A_453 IL_25873.1 | |
| IL_9MKK_051 | 1/A/1405:1409, 1/A/1491:1496 | No text annotation | ||
| IL_9MKK_052 | 1/A/1412:1414, 1/A/1486:1488 | Isolated non-canonical cWW pair | geometric IL_5J7L_061 NA | |
| IL_9MKK_053 | 1/A/1416:1419, 1/A/1481:1484 | Double sheared | geometric IL_5J7L_062 NA | |
| IL_9MKK_054 | 1/A/1430:1435, 1/A/1466:1470 | Triple sheared related | geometric IL_5J7L_063 NA | |
| IL_9MKK_055 | 1/A/1440:1442, 1/A/1460:1461 | Minor groove platform | geometric IL_7MLW_004 NA | |
| IL_9MKK_056 | 1/A/1445:1448, 1/A/1455:1457 | No text annotation | geometric IL_5J7L_065 NA | |
| IL_9MKK_057 | 1/a/36:37, 1/a/442:444 | Single bulged A | geometric IL_7A0S_002 IL_14190.1 | |
| IL_9MKK_058 | 1/a/43:44, 1/a/434:436 | Minor groove platform | geometric IL_5J7L_247 NA | |
| IL_9MKK_059 | 1/a/81:85, 1/a/97:105 | No text annotation | geometric IL_5J7L_248 NA | |
| IL_9MKK_060 | 1/a/188:194, 1/a/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 NA | |
| IL_9MKK_061 | 1/a/239:245, 1/a/253:258 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 NA | |
| IL_9MKK_062 | 1/a/269:271, 1/a/366:370 | No text annotation | geometric IL_5J7L_252 NA | |
| IL_9MKK_063 | 1/a/273:281, 1/a/359:364 | No text annotation | ||
| IL_9MKK_064 | 1/a/293:295, 1/a/343:347 | No text annotation | geometric IL_5J7L_254 NA | |
| IL_9MKK_065 | 1/a/536:539, 1/a/554:557 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_9MKK_066 | 1/a/564:566, 1/a/575:577 | Isolated non-canonical cWW pair | geometric IL_7A0S_011 IL_71625.1 | |
| IL_9MKK_067 | 1/a/606:610, 1/a/618:622 | AAA cross-strand stack | geometric IL_5J7L_258 NA | |
| IL_9MKK_068 | 1/a/672:674, 1/a/806:808 | Isolated non-canonical cWW pair | geometric IL_8P9A_255 IL_01003.1 | |
| IL_9MKK_069 | 1/a/674:678, 1/a/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 NA | |
| IL_9MKK_070 | 1/a/697:698, 1/a/763:765 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_9MKK_071 | 1/a/702:703, 1/a/728:730 | Single bulged G | geometric IL_5J7L_262 NA | |
| IL_9MKK_072 | 1/a/703:707, 1/a/724:728 | Triple sheared | geometric IL_4WF9_024 IL_15190.1 | |
| IL_9MKK_073 | 1/a/738:740, 1/a/757:758 | Major groove platform | geometric IL_4WF9_026 IL_48076.7 | |
| IL_9MKK_074 | 1/a/775:777, 1/a/787:791 | No text annotation | ||
| IL_9MKK_075 | 1/a/844:847, 1/a/933:934 | 90 degree turn | geometric IL_5J7L_267 NA | |
| IL_9MKK_076 | 1/a/844:851, 1/a/926:934 | No text annotation | ||
| IL_9MKK_077 | 1/a/847:851, 1/a/926:933 | No text annotation | ||
| IL_9MKK_078 | 1/a/856:862, 1/a/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 NA | |
| IL_9MKK_079 | 1/a/862:863, 1/a/913:915 | Single bulged G | geometric IL_5J7L_271 NA | |
| IL_9MKK_080 | 1/a/864:868, 1/a/909:912 | C-loop with bulged stacked A's | geometric IL_5J7L_272 NA | |
| IL_9MKK_081 | 1/a/870:872, 1/a/905:907 | Isolated non-canonical cWW pair | geometric IL_1Z7F_006 NA | |
| IL_9MKK_082 | 1/a/875:879, 1/a/898:902 | Double sheared with non-canonical cWW | geometric IL_4WFL_001 IL_87767.1 | |
| IL_9MKK_084 | 1/a/994:996, 1/a/1159:1160 | Single bulged C | geometric IL_5J7L_276 NA | |
| IL_9MKK_085 | 1/a/998:1002, 1/a/1153:1157 | UAA/GAN | geometric IL_4WF9_036 IL_08938.1 | |
| IL_9MKK_086 | 1/a/1004:1011, 1/a/1150:1151 | SSU/LSU pseudoknot | geometric IL_4WF9_037 IL_11411.1 | |
| IL_9MKK_087 | 1/a/1011:1013, 1/a/1149:1150 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_9MKK_088 | 1/a/1018:1024, 1/a/1140:1144 | Kink-turn related | geometric IL_5J7L_280 NA | |
| IL_9MKK_089 | 1/a/1024:1030, 1/a/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_9MKK_090 | 1/a/1031:1034, 1/a/1121:1123 | Isolated non-canonical cWW pair | geometric IL_5J7L_282 NA | |
| IL_9MKK_091 | 1/a/1038:1041, 1/a/1114:1117 | Tandem non-canonical cWW pairs | geometric IL_8P9A_327 IL_15225.1 | |
| IL_9MKK_092 | 1/a/1043:1051, 1/a/1108:1112 | Kink-turn | geometric IL_8CRE_057 NA | |
| IL_9MKK_093 | 1/a/1196:1198, 1/a/1247:1250 | Isolated cWS basepair | geometric IL_4WF9_044 IL_42997.4 | |
| IL_9MKK_094 | 1/a/1202:1206, 1/a/1240:1243 | No text annotation | geometric IL_5J7L_287 NA | |
| IL_9MKK_095 | 1/a/1208:1215, 1/a/1234:1238 | Kink-turn | geometric IL_5J7L_288 NA | |
| IL_9MKK_096 | 1/a/1262:1269, 1/a/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_289 NA | |
| IL_9MKK_097 | 1/a/1319:1323, 1/a/1331:1333 | C-loop | geometric IL_5J7L_291 NA | |
| IL_9MKK_098 | 1/a/1351:1355, 1/a/1376:1380 | UAA/GAN | geometric IL_7A0S_048 IL_89021.3 | |
| IL_9MKK_099 | 1/a/1357:1361, 1/a/1370:1374 | tSH-tHW-tHS | geometric IL_5J7L_293 NA | |
| IL_9MKK_100 | 1/a/1415:1416, 1/a/1582:1587 | No text annotation | geometric IL_5J7L_294 NA | |
| IL_9MKK_101 | 1/a/1417:1421, 1/a/1577:1581 | UAA/GAN | geometric IL_5J7L_295 NA | |
| IL_9MKK_102 | 1/a/1432:1435, 1/a/1557:1561 | Tandem non-canonical cWW pairs | geometric IL_5J7L_296 NA | |
| IL_9MKK_103 | 1/a/1437:1440, 1/a/1551:1555 | tSH-tHW | geometric IL_5J7L_297 NA | |
| IL_9MKK_104 | 1/a/1450:1451, 1/a/1459:1461 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_9MKK_105 | 1/a/1468:1471, 1/a/1520:1524 | No text annotation | geometric IL_5J7L_299 NA | |
| IL_9MKK_106 | 1/a/1474:1479, 1/a/1512:1517 | No text annotation | ||
| IL_9MKK_107 | 1/a/1481:1482, 1/a/1507:1510 | 180 degree turn | geometric IL_5J7L_301 NA | |
| IL_9MKK_108 | 1/a/1489:1491, 1/a/1499:1500 | Single bulged A | geometric IL_7DLZ_001 NA | |
| IL_9MKK_109 | 1/a/1526:1529, 1/a/1542:1546 | UAA/GAN variation | geometric IL_5J7L_303 NA | |
| IL_9MKK_110 | 1/a/1651:1656, 1/a/2004:2006 | No text annotation | geometric IL_5J7L_304 NA | |
| IL_9MKK_111 | 1/a/1663:1665, 1/a/1995:1997 | Isolated tWW turn | geometric IL_5J7L_305 NA | |
| IL_9MKK_112 | 1/a/1666:1669, 1/a/1993:1994 | Major groove platform; stack outside cWW | geometric IL_8P9A_304 IL_74641.1 | |
| IL_9MKK_113 | 1/a/1666:1674, 1/a/1990:1994 | No text annotation | geometric IL_4WF9_117 IL_80252.1 | |
| IL_9MKK_114 | 1/a/1669:1674, 1/a/1990:1993 | Intercalated tWH | geometric IL_4WF9_065 IL_28217.1 | |
| IL_9MKK_115 | 1/a/1686:1691, 1/a/1696:1702 | No text annotation | geometric IL_8P9A_307 IL_20700.1 | |
| IL_9MKK_116 | 1/a/1712:1718, 1/a/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_5J7L_309 NA | |
| IL_9MKK_117 | 1/a/1720:1724, 1/a/1736:1740 | Triple sheared | geometric IL_5J7L_310 NA | |
| IL_9MKK_118 | 1/a/1770:1771, 1/a/1980:1982 | Single bulged A | geometric IL_4WF9_068 IL_14190.1 | |
| IL_9MKK_119 | 1/a/1798:1804, 1/a/1813:1821 | Kink-turn related | geometric IL_5J7L_313 NA | |
| IL_9MKK_120 | 1/a/1837:1840, 1/a/1902:1903 | Minor groove platform, major groove intercalation | geometric IL_7A0S_066 IL_73108.1 | |
| IL_9MKK_121 | 1/a/1841:1842, 1/a/1898:1901 | No text annotation | geometric IL_8CRE_090 NA | |
| IL_9MKK_122 | 1/a/1846:1849, 1/a/1893:1894 | Major groove minor groove platform; mini C-loop | geometric IL_1I6U_002 IL_73108.1 | |
| IL_9MKK_123 | 1/a/1851:1860, 1/a/1882:1891 | No text annotation | geometric IL_5J7L_387 NA | |
| IL_9MKK_124 | 1/a/1864:1867, 1/a/1874:1878 | UAA/GAN related | geometric IL_5J7L_317 NA | |
| IL_9MKK_125 | 1/a/1933:1934, 1/a/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_9MKK_126 | 1/a/2050:2052, 1/a/2617:2618 | Major groove platform | geometric IL_4LFB_024 IL_48076.7 | |
| IL_9MKK_127 | 1/a/2054:2056, 1/a/2612:2615 | No text annotation | geometric IL_5J7L_321 NA | |
| IL_9MKK_128 | 1/a/2070:2071, 1/a/2438:2441 | Minor groove platform | geometric IL_4V9F_075 IL_34520.1 | |
| IL_9MKK_129 | 1/a/2081:2083, 1/a/2236:2239 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.1 | |
| IL_9MKK_130 | 1/a/2085:2087, 1/a/2232:2234 | Isolated non-canonical cWW pair | geometric IL_5J7L_326 NA | |
| IL_9MKK_131 | 1/a/2202:2204, 1/a/2220:2221 | Single bulged U | geometric IL_5J7L_331 NA | |
| IL_9MKK_132 | 1/a/2297:2299, 1/a/2317:2321 | No text annotation | geometric IL_5J7L_332 NA | |
| IL_9MKK_133 | 1/a/2350:2353, 1/a/2364:2367 | Double sheared | geometric IL_5J7L_333 NA | |
| IL_9MKK_134 | 1/a/2401:2403, 1/a/2414:2415 | Single bulged U | geometric IL_5LYS_008 IL_97561.1 | |
| IL_9MKK_135 | 1/a/2459:2461, 1/a/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7A0S_086 IL_36931.1 | |
| IL_9MKK_136 | 1/a/2510:2513, 1/a/2571:2578 | No text annotation | ||
| IL_9MKK_137 | 1/a/2521:2523, 1/a/2540:2544 | No text annotation | ||
| IL_9MKK_138 | 1/a/2591:2592, 1/a/2601:2603 | Single bulged A | geometric IL_9C75_002 IL_14190.1 | |
| IL_9MKK_139 | 1/a/2636:2640, 1/a/2774:2782 | tSH-tHS-tHW | geometric IL_5J7L_345 NA | |
| IL_9MKK_140 | 1/a/2652:2658, 1/a/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.5 | |
| IL_9MKK_141 | 1/a/2680:2684, 1/a/2725:2727 | C-loop | geometric IL_5J7L_347 NA | |
| IL_9MKK_142 | 1/a/2687:2691, 1/a/2718:2722 | UAA/GAN related, with intercalation | geometric IL_5J7L_348 NA | |
| IL_9MKK_143 | 1/a/2695:2696, 1/a/2711:2714 | Multiple bulged bases | geometric IL_4WF9_103 IL_44609.1 | |
| IL_9MKK_144 | 1/a/2737:2742, 1/a/2762:2767 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_9MKK_145 | 1/a/2806:2811, 1/a/2889:2892 | No text annotation | geometric IL_5J7L_351 NA | |
| IL_9MKK_146 | 1/a/2838:2839, 1/a/2878:2880 | Major groove intercalation | geometric IL_5J7L_352 NA | |
| IL_9MKK_147 | 1/a/2843:2846, 1/a/2870:2874 | Multiple bulged bases with non-canonical cWW | geometric IL_5J7L_353 NA | |
| IL_9MKK_148 | 1/a/2847:2852, 1/a/2865:2869 | tHS double platform | geometric IL_5J7L_354 NA | |
| IL_9MKK_149 | 1/b/17:18, 1/b/65:67 | Major groove intercalation | geometric IL_7JNH_003 NA | |
| IL_9MKK_150 | 1/b/23:28, 1/b/56:60 | No text annotation | geometric IL_5J7L_356 NA | |
| IL_9MKK_151 | 1/b/30:31, 1/b/51:54 | Major groove minor groove platform; mini C-loop | geometric IL_5J7L_357 NA | |
| IL_9MKK_152 | 1/b/34:38, 1/b/44:48 | Symmetric double minor groove platform | geometric IL_5J7L_358 NA | |
| IL_9MKK_153 | 1/b/71:79, 1/b/97:105 | Bacterial 5S Loop E | geometric IL_5J7L_359 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9MKK_019 | No text annotation | ||
| IL_9MKK_040 | No text annotation | ||
| IL_9MKK_047 | Double sheared with non-canonical cWW | ||
| IL_9MKK_083 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9MKK_001 | 1/A/46:47, 1/A/361:367, 1/A/393:395 | No text annotation | geometric J3_5J7L_001 NA | |
| J3_9MKK_002 | 1/A/46:52, 1/A/359:367, 1/A/393:395 | No text annotation | geometric J3_5J7L_050 NA | |
| J3_9MKK_003 | 1/A/586:588, 1/A/651:654, 1/A/754:755 | No text annotation | geometric J3_5J7L_002 NA | |
| J3_9MKK_004 | 1/A/586:588, 1/A/651:655, 1/A/751:755 | No text annotation | geometric J3_4LFB_015 J3_17385.5 | |
| J3_9MKK_005 | 1/A/672:673, 1/A/717:725, 1/A/732:734 | No text annotation | geometric J3_5J7L_003 NA | |
| J3_9MKK_006 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation | geometric J3_4WF9_005 J3_68164.1 | |
| J3_9MKK_007 | 1/A/936:939, 1/A/1344:1350, 1/A/1372:1379 | No text annotation | geometric J3_5J7L_052 NA | |
| J3_9MKK_008 | 1/A/943:946, 1/A/1235:1237, 1/A/1337:1340 | No text annotation | geometric J3_4LFB_003 J3_44359.1 | |
| J3_9MKK_009 | 1/A/987:997, 1/A/1044:1048, 1/A/1209:1218 | No text annotation | ||
| J3_9MKK_010 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation | geometric J3_5J7L_008 NA | |
| J3_9MKK_011 | 1/A/1073:1074, 1/A/1083:1086, 1/A/1099:1102 | No text annotation | geometric J3_4LFB_017 J3_11018.1 | |
| J3_9MKK_012 | 1/A/1116:1118, 1/A/1155:1161, 1/A/1175:1184 | No text annotation | geometric J3_5J7L_054 NA | |
| J3_9MKK_013 | 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | No text annotation | geometric J3_4LFB_009 J3_03192.1 | |
| J3_9MKK_014 | 1/a/24:31, 1/a/474:484, 1/a/496:516 | No text annotation | ||
| J3_9MKK_015 | 1/a/32:35, 1/a/445:461, 1/a/468:473 | No text annotation | geometric J3_5J7L_067 NA | |
| J3_9MKK_016 | 1/a/56:57, 1/a/70:76, 1/a/110:114 | No text annotation | geometric J3_5J7L_037 NA | |
| J3_9MKK_017 | 1/a/683:689, 1/a/773:775, 1/a/791:794 | No text annotation | geometric J3_5J7L_038 NA | |
| J3_9MKK_018 | 1/a/698:700, 1/a/732:736, 1/a/760:763 | No text annotation | geometric J3_5J7L_039 NA | |
| J3_9MKK_019 | 1/a/1298:1303, 1/a/1625:1627, 1/a/1639:1642 | No text annotation | geometric J3_5J7L_041 NA | |
| J3_9MKK_020 | 1/a/1306:1309, 1/a/1605:1611, 1/a/1620:1622 | No text annotation | geometric J3_7A0S_007 J3_47341.1 | |
| J3_9MKK_021 | 1/a/1344:1349, 1/a/1382:1385, 1/a/1402:1403 | No text annotation | geometric J3_5J7L_043 NA | |
| J3_9MKK_022 | 1/a/1424:1429, 1/a/1564:1565, 1/a/1568:1574 | No text annotation | geometric J3_5J7L_069 NA | |
| J3_9MKK_023 | 1/a/2091:2093, 1/a/2196:2200, 1/a/2223:2228 | Kink-turn 3-way junction | geometric J3_5J7L_044 NA | |
| J3_9MKK_024 | 1/a/2282:2284, 1/a/2384:2395, 1/a/2421:2427 | No text annotation | geometric J3_5J7L_070 NA | |
| J3_9MKK_025 | 1/a/2295:2297, 1/a/2321:2323, 1/a/2332:2337 | No text annotation | geometric J3_5J7L_045 NA | |
| J3_9MKK_026 | 1/a/2295:2299, 1/a/2317:2323, 1/a/2332:2337 | No text annotation | geometric J3_5J7L_071 NA | |
| J3_9MKK_027 | 1/a/2517:2520, 1/a/2545:2547, 1/a/2561:2567 | No text annotation | geometric J3_4WF9_009 J3_32601.6 | |
| J3_9MKK_028 | 1/a/2789:2791, 1/a/2805:2806, 1/a/2892:2894 | No text annotation | geometric J3_5J7L_047 NA | |
| J3_9MKK_029 | 1/a/2812:2815, 1/a/2831:2836, 1/a/2882:2888 | No text annotation | ||
| J3_9MKK_030 | 1/b/10:16, 1/b/68:70, 1/b/106:110 | No text annotation | geometric J3_5J7L_049 NA | |
| J4_9MKK_001 | 1/A/115:123, 1/A/238:240, 1/A/286:289, 1/A/311:312 | No text annotation | ||
| J4_9MKK_002 | 1/A/142:144, 1/A/178:184, 1/A/193:199, 1/A/218:221 | No text annotation | ||
| J4_9MKK_003 | 1/A/575:577, 1/A/764:769, 1/A/810:821, 1/A/879:880 | No text annotation | ||
| J4_9MKK_004 | 1/Z/7:10, 1/Z/25:27, 1/Z/43:49, 1/Z/65:66 | No text annotation | ||
| J4_9MKK_005 | 1/a/268:269, 1/a/370:375, 1/a/399:406, 1/a/421:424 | No text annotation | ||
| J4_9MKK_006 | 1/a/297:301, 1/a/316:319, 1/a/323:325, 1/a/337:341 | No text annotation | ||
| J4_9MKK_007 | 1/a/601:604, 1/a/624:628, 1/a/635:638, 1/a/650:656 | No text annotation | ||
| J4_9MKK_008 | 1/a/1270:1276, 1/a/1294:1295, 1/a/1645:1648, 1/a/2009:2010 | No text annotation | ||
| J4_9MKK_009 | 1/a/1310:1314, 1/a/1338:1343, 1/a/1404:1405, 1/a/1597:1604 | No text annotation | ||
| J4_9MKK_010 | 1/a/1444:1445, 1/a/1466:1467, 1/a/1525:1526, 1/a/1546:1547 | No text annotation | ||
| J4_9MKK_011 | 1/a/1772:1776, 1/a/1788:1792, 1/a/1827:1830, 1/a/1975:1979 | No text annotation | ||
| J4_9MKK_012 | 1/a/2285:2289, 1/a/2343:2347, 1/a/2370:2372, 1/a/2381:2383 | No text annotation | ||
| J4_9MKK_013 | 1/a/2643:2646, 1/a/2674:2676, 1/a/2731:2735, 1/a/2769:2771 | No text annotation | ||
| J5_9MKK_001 | 1/A/58:61, 1/A/106:113, 1/A/314:316, 1/A/337:339, 1/A/350:354 | No text annotation | ||
| J5_9MKK_002 | 1/a/47:54, 1/a/116:121, 1/a/130:131, 1/a/148:150, 1/a/176:178 | No text annotation | ||
| J5_9MKK_003 | 1/a/584:589, 1/a/668:671, 1/a/809:812, 1/a/1195:1196, 1/a/1250:1256 | No text annotation | ||
| J5_9MKK_004 | 1/a/1674:1682, 1/a/1706:1707, 1/a/1751:1752, 1/a/1756:1764, 1/a/1988:1990 | No text annotation | ||
| J5_9MKK_005 | 1/a/2074:2077, 1/a/2243:2246, 1/a/2258:2259, 1/a/2281:2282, 1/a/2427:2435 | No text annotation | ||
| J6_9MKK_001 | 1/a/45:46, 1/a/179:184, 1/a/212:224, 1/a/231:235, 1/a/262:266, 1/a/426:433 | No text annotation | ||
| J6_9MKK_002 | 1/a/2074:2077, 1/a/2243:2246, 1/a/2258:2259, 1/a/2281:2284, 1/a/2384:2395, 1/a/2421:2435 | No text annotation | ||
| J7_9MKK_001 | 1/a/817:822, 1/a/835:838, 1/a/940:946, 1/a/971:976, 1/a/987:991, 1/a/1163:1164, 1/a/1185:1190 | No text annotation | ||
| J10_9MKK_001 | 1/a/8:15, 1/a/525:533, 1/a/560:564, 1/a/577:579, 1/a/1261:1262, 1/a/2017:2023, 1/a/2040:2043, 1/a/2625:2630, 1/a/2788:2789, 1/a/2894:2895 | No text annotation |
Problematic loops
No problematic loops
Coloring options: