HL_9MKK_023

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

9MKK|1|A|C|1267

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MKK_023 not in the Motif Atlas

Geometric match to HL_7U4A_001

Geometric discrepancy: 0.3821

The information below is about HL_7U4A_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9MKK|1|A|C|1265
9MKK|1|A|G|1266
9MKK|1|A|C|1267
9MKK|1|A|G|1268
9MKK|1|A|A|1269
9MKK|1|A|G|1270

Current chains

Chain A

16S rRNA

Nearby chains

Chain S

Small ribosomal subunit protein uS19