HL_9MKK_039

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9MKK|1|a|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MKK_039 not in the Motif Atlas

Geometric match to HL_6DN2_003

Geometric discrepancy: 0.1813

The information below is about HL_6DN2_003

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

9MKK|1|a|C|305
9MKK|1|a|U|306
9MKK|1|a|G|307
9MKK|1|a|G|308
9MKK|1|a|A|309
9MKK|1|a|A|310
9MKK|1|a|A|311
9MKK|1|a|G|312

Current chains

Chain a

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L24